View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4546_low_3 (Length: 520)
Name: NF4546_low_3
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4546_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 27656688 - 27656189
Alignment:
| Q |
16 |
cattgttacttataggtcataatcaatggactatatagatatacatgaactagaatctagaaataatcatacaggaatgaggatatagctctttgttaat |
115 |
Q |
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| T |
27656688 |
cattgttacttataggtcataatcaatggactatatagatatacatgaactagaaactagaaacaatcatacaaaaatgaggatatagctctttgttaat |
27656589 |
T |
|
| Q |
116 |
caagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27656588 |
taagtgacattgcattacatgcatagtataatacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaa |
27656489 |
T |
|
| Q |
216 |
tgtacatccattccatggagagtgatcaatttgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatatttttagatcgtcaattaa |
315 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
27656488 |
tgtacatccattccatggagagtgatcaattcgaggataagctccaccaccatcatccaccaatatcatcaactgtaaatattgttagatcgtcaattaa |
27656389 |
T |
|
| Q |
316 |
tatcgattgtcagataattaaaaatattttattatcattacgactatttctaaagttacacatgtgatttgttatgatttattgatagcgttaaaagtat |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
27656388 |
tatcgattgtcagataattaaaaatattttattttcattatgactacttctaaagttacacatatgatttgttatgatttattgatagcgttaaaagcat |
27656289 |
T |
|
| Q |
416 |
cttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctacnnnnnnngtgcttaacctcttgctcctttgctact |
515 |
Q |
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| T |
27656288 |
cttagaaaagtatgtactaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccctactttttttgtgcttaatctcttgctcctttggtact |
27656189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 41309954 - 41310096
Alignment:
| Q |
147 |
tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt |
246 |
Q |
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||||||||||||||||||||| || || ||||| |||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41309954 |
tacctttaatgcaagagctatggccacaccaacgatgaaaagaaagaaaggcataacaaaatcagccaaagtacatccattccatggagagtgatcaatg |
41310053 |
T |
|
| Q |
247 |
tgaggataagctccaccaccatcatccaccaatatcatcaact |
289 |
Q |
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| T |
41310054 |
cgtgaataagctccaccagcatcgtccaccaatatcatcaact |
41310096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 41324645 - 41324762
Alignment:
| Q |
147 |
tacctttaatgcaagagctatagcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgatcaatt |
246 |
Q |
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| T |
41324645 |
tacctttaatgcaagggctatggcaacaccaacaatgaaaagaaagaaaggcattacaaaatcagccaaagtacatccatcccacggggcatgatcaatg |
41324744 |
T |
|
| Q |
247 |
tgaggataagctccacca |
264 |
Q |
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| T |
41324745 |
cgtggataagctccacca |
41324762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 477
Target Start/End: Original strand, 41310313 - 41310359
Alignment:
| Q |
431 |
actaaccacgattgtgaggcccctaaatgcatcaagagttgcaaccc |
477 |
Q |
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| T |
41310313 |
actaaccacaatggtgaggcccctaaatgcatcaagtgttgcaaccc |
41310359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 928791 - 928719
Alignment:
| Q |
169 |
gcaactccaacaatgaaaaggaaaaaaggcataacgaaatcagccaatgtacatccattccatggagagtgat |
241 |
Q |
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||||| |||||||| ||||||||||| |||||||| ||||| || | ||| | |||||||||||||| |||| |
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| T |
928791 |
gcaacaccaacaataaaaaggaaaaatggcataacaaaatctgctattgttaaaccattccatggagaatgat |
928719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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