View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546_low_7 (Length: 391)

Name: NF4546_low_7
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546_low_7
NF4546_low_7
[»] chr2 (5 HSPs)
chr2 (10-391)||(35105790-35106172)
chr2 (53-378)||(35183753-35184078)
chr2 (96-378)||(35054891-35055173)
chr2 (89-377)||(35177756-35178044)
chr2 (89-332)||(35169510-35169753)
[»] chr7 (5 HSPs)
chr7 (77-326)||(25484265-25484514)
chr7 (89-246)||(25436405-25436562)
chr7 (93-333)||(25636522-25636762)
chr7 (86-333)||(25442323-25442570)
chr7 (86-248)||(25478885-25479047)
[»] chr5 (1 HSPs)
chr5 (76-194)||(500322-500440)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 391
Target Start/End: Complemental strand, 35106172 - 35105790
Alignment:
Q  10 gtttgccgttttccaatttgaggcaaggagccgaagcttccaattcttccatggactccaatagcttccaaagctgtagatacgatgtgtttataagttt 109  Q
    ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |  |||| |   ||||||| ||||||||| |||||||| |||||    
T  35106172 gtttgccattttcaaatttgagacaaggagctgaagcttccaattcttccatggattttaataacgatcaaagctatagatacgacgtgtttatcagttt 35106073  T
Q  110 tagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaa 209  Q
     |||||||| |||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106072 cagaggtccagacacgcgcaacacttttgtcgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaa 35105973  T
Q  210 ggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttgg 309  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||  |  |||||||||||||||||||| ||||||||||||| ||||| ||||||||||    
T  35105972 ggagaatccctttcgccgcaacttcttcaagcaattcaaaattctcgggtttctattgttgtcttctctgaaagatatgccgagtcaacatggtgtttgg 35105873  T
Q  310 aagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatgatg-tccatctcat 391  Q
    |||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  35105872 aagagatggctactgttgctgaatgccgtaaaagattgaaacaaactgttttccctgttttttatgatgttgatccatctcat 35105790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 53 - 378
Target Start/End: Complemental strand, 35184078 - 35183753
Alignment:
Q  53 ttcttccatggactccaatagcttccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttat 152  Q
    ||||||||  || ||||||||| ||||||||| |||||| ||||||||||| |||||  | ||| |||||   |||| ||||||||||||||||||| ||    
T  35184078 ttcttccagtgattccaatagcatccaaagctatagatatgatgtgtttatcagtttccgtggtgctgacacccgcagcacttttgttgatcatcttcat 35183979  T
Q  153 gctcatctaaaaagaaagggtatttttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagtt 252  Q
    |||||||||| ||  ||||||||||| || |||||||||||  |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  35183978 gctcatctaacaactaagggtattttcgctttcaaggatgacaaaagacttgaaaaaggagaatccctttcgccgcaacttctacaagcaattcaaagtt 35183879  T
Q  253 caagaatttctattgttgtcttctctcaaagatatgccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaaca 352  Q
    |  | ||||||||||||||||||||| |||  ||||| || ||||| |  ||||||||||||||||| |||||||||||||  |||  | ||||||||||    
T  35183878 ctcggatttctattgttgtcttctctaaaaattatgcggagtcaacattatgtttggaagagatggccactattgctgaatatcatacagaattgaaaca 35183779  T
Q  353 aactgttttccctggtttttatgatg 378  Q
     ||||||||||||  |||||||||||    
T  35183778 gactgttttccctattttttatgatg 35183753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 96 - 378
Target Start/End: Complemental strand, 35055173 - 35054891
Alignment:
Q  96 gtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatgatc 195  Q
    ||||| || ||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||      
T  35055173 gtgttcatcagttttagaggtcctgacactcgcaatagttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgccttcaaggatgaca 35055074  T
Q  196 aaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatgccgattc 295  Q
    |||| ||||||||||||||||   |||||||||| |||||||||||||||| || |||  |||||| |||||||||||||||| ||| ||||||||| ||    
T  35055073 aaagtcttgagaaaggagaatttatttcaccgcagcttctacaagcaattcgaaattcgcgaatttttattgttgtcttctctaaaacatatgccgaatc 35054974  T
Q  296 aacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgatg 378  Q
    ||| ||||||||||||||||||||| | |||||||| ||   |||  | || |||||||| |||||||||  |||||||||||    
T  35054973 aacttggtgtttggaagagatggctgcaattgctgattgttgtgagtatttcaaacaaacagttttccctattttttatgatg 35054891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 89 - 377
Target Start/End: Complemental strand, 35178044 - 35177756
Alignment:
Q  89 atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag 188  Q
    |||||| |||||||| ||||| |||||||| |||   ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  35178044 atacgacgtgtttatcagtttcagaggtccagacacccgcaacacttttgttgatcatctttatgctcatctaacaagaaaaggtatttttgcgttcaag 35177945  T
Q  189 gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatg 288  Q
    |||||| ||||||| ||||||||||||| |||||| | |||||||| ||||||||||  || |||| | || ||||| |||||||||||  |||||||||    
T  35177944 gatgataaaaggctcgagaaaggagaatgcctttcgctgcaacttcgacaagcaattgcaaattcacggatatctatcgttgtcttctcagaaagatatg 35177845  T
Q  289 ccgattcaacgtggtgtttggaagagatggctactattgctgaatgccatgaaaaattgaaacaaactgttttccctggtttttatgat 377  Q
    | || ||||| |||||||||||||| ||||||||||||| |||||| | |   || ||   ||||||||||||||||| ||||||||||    
T  35177844 ctgagtcaacatggtgtttggaagaaatggctactattgttgaatgtcgtagcaatttcttacaaactgttttccctgttttttatgat 35177756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 89 - 332
Target Start/End: Complemental strand, 35169753 - 35169510
Alignment:
Q  89 atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag 188  Q
    ||||||||||||||| ||||| |||||  |||||   || ||||||||||||||||||||||||||||||||||  ||||||||| |||| |||||||||    
T  35169753 atacgatgtgtttatcagtttcagaggcgctgacacccgtaacacttttgttgatcatctttatgctcatctaactagaaagggtgttttcgccttcaag 35169654  T
Q  189 gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaagatatg 288  Q
    |||||| ||||||| ||||||||||||| | ||||| |||||| || ||||||||||  || |||| | ||||||||||||||||||||  |||||||||    
T  35169653 gatgataaaaggctagagaaaggagaatgcttttcaacgcaacatcgacaagcaattacaaattcacggatttctattgttgtcttctcagaaagatatg 35169554  T
Q  289 ccgattcaacgtggtgtttggaagagatggctactattgctgaa 332  Q
    | || ||||| |||||||||||||| |||||||| |||| ||||    
T  35169553 ctgagtcaacatggtgtttggaagaaatggctaccattgttgaa 35169510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 77 - 326
Target Start/End: Original strand, 25484265 - 25484514
Alignment:
Q  77 ccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatt 176  Q
    |||||||| ||||||||||||||| || ||||| |||||| |||||   || ||  | |||||||| ||||| || |||||||| || ||||| ||||||    
T  25484265 ccaaagctatagatacgatgtgttcatcagtttcagaggttctgacacccgtaattcctttgttgaccatctctacgctcatctcaatagaaaaggtatt 25484364  T
Q  177 tttgccttcaaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttct 276  Q
    ||  |||||||||||||  |   |||  ||||||||||| || ||||||| |||||||||||||||||||||   ||| | |||||||| ||||| ||||    
T  25484365 ttcaccttcaaggatgacaagcagctacagaaaggagaagccatttcaccccaacttctacaagcaattcaacagtcacgcatttctatcgttgttttct 25484464  T
Q  277 ctcaaaga-tatgccgattcaacgtggtgtttggaagagatggctactatt 326  Q
    | |||||| |||||   |||||| ||||||||||| || |||||| |||||    
T  25484465 c-caaagattatgcttcttcaacatggtgtttggatgaaatggctgctatt 25484514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 25436562 - 25436405
Alignment:
Q  89 atacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaag 188  Q
    |||||||||||| || |||||||||||| ||||    |||||  ||||||||||||||||  |  ||||||||   ||||| ||||||||| ||||||||    
T  25436562 atacgatgtgttcatcagttttagaggttctgagacccgcaattcttttgttgatcatctccactctcatctagttagaaaaggtatttttaccttcaag 25436463  T
Q  189 gatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattc 246  Q
    |||||  |   |||  | ||||||||| || ||||||| |||||||||||||||||||    
T  25436462 gatgacaagcagctccaaaaaggagaagccatttcaccccaacttctacaagcaattc 25436405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 333
Target Start/End: Original strand, 25636522 - 25636762
Alignment:
Q  93 gatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttcaaggatg 192  Q
    ||||| ||||| ||||| ||||||||||||   |||||||| |||||||| ||||| ||||||||||| |  ||||| |||||||   ||||||||||||    
T  25636522 gatgtatttatcagtttcagaggtcctgacacccgcaacacctttgttgaccatctctatgctcatctcactagaaaaggtatttcgaccttcaaggatg 25636621  T
Q  193 atcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaaga-tatgccg 291  Q
    |  ||  |||| ||||||| |||||| ||||||  |||||| | || |||||| ||  |||  |  |||||||  |||||||||| |||||| |||||      
T  25636622 acaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaagattatgctt 25636720  T
Q  292 attcaacgtggtgtttggaagagatggctactattgctgaat 333  Q
      ||||| ||||||||||| || |||||| |||||| |||||    
T  25636721 catcaacatggtgtttggatgaaatggctgctattgatgaat 25636762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 333
Target Start/End: Original strand, 25442323 - 25442570
Alignment:
Q  86 tagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttc 185  Q
    ||||||||||||||| || ||||||||||||||||||   |||||  | |||||||| ||||| || | |||||| |  ||||| |||||||| | ||||    
T  25442323 tagatacgatgtgttcatcagttttagaggtcctgacacccgcaattcctttgttgaccatctctacgatcatctcactagaaaaggtattttcgtcttc 25442422  T
Q  186 aaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaaagttcaagaatttctattgttgtcttctctcaaaga- 284  Q
    ||||||||  ||  |||| ||||||| |||||| ||||||  |||||| | || |||||| ||  |||  |  |||||||  |||||||||| ||||||     
T  25442423 aaggatgacaaatcgcttcagaaaggcgaatccatttcactccaacttttgcaggcaattaaagattcgcgggtttctatcattgtcttctc-caaagat 25442521  T
Q  285 tatgccgattcaacgtggtgtttggaagagatggctactattgctgaat 333  Q
    |||||    ||||| ||||||||||| || |||||| |||||| |||||    
T  25442522 tatgcttcatcaacatggtgtttggatgaaatggctgctattgatgaat 25442570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 25479047 - 25478885
Alignment:
Q  86 tagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtatttttgccttc 185  Q
    ||||||||| |||||||| ||||| ||||||  ||||   || || || |||| ||| ||||| ||||||||||| |  ||||| ||||||||  | |||    
T  25479047 tagatacgacgtgtttatcagtttcagaggtattgacacccgtaaaacctttgctgaccatctctatgctcatctcactagaaaaggtattttcacgttc 25478948  T
Q  186 aaggatgatcaaaggcttgagaaaggagaatccctttcaccgcaacttctacaagcaattcaa 248  Q
    | |||||| ||   ||| |||||||| |||||| ||||||  ||||||| ||| |||||||||    
T  25478947 atggatgaccagcagctcgagaaaggggaatccatttcactccaacttcgacaggcaattcaa 25478885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 500440 - 500322
Alignment:
Q  76 tccaaagctgtagatacgatgtgtttataagttttagaggtcctgacgttcgcaacacttttgttgatcatctttatgctcatctaaaaagaaagggtat 175  Q
    ||||||||| |||||| ||||||||||| ||||| |||||| | |||   ||||||||||||||||||||||| ||||||||||| |  ||||| |||||    
T  500440 tccaaagctatagatatgatgtgtttatcagtttcagaggttccgacacacgcaacacttttgttgatcatctctatgctcatctcattagaaaaggtat 500341  T
Q  176 ttttgccttcaaggatgat 194  Q
    |||  |||| |||||||||    
T  500340 tttcacctttaaggatgat 500322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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