View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4546_low_9 (Length: 361)

Name: NF4546_low_9
Description: NF4546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4546_low_9
NF4546_low_9
[»] chr1 (13 HSPs)
chr1 (1-351)||(13244761-13245111)
chr1 (1-144)||(30368348-30368491)
chr1 (1-149)||(13085911-13086059)
chr1 (2-74)||(13094278-13094350)
chr1 (2-142)||(13100812-13100952)
chr1 (2-74)||(13070417-13070489)
chr1 (2-74)||(13129707-13129779)
chr1 (2-74)||(13161400-13161472)
chr1 (2-66)||(19279409-19279473)
chr1 (2-65)||(13271474-13271537)
chr1 (1-66)||(12964115-12964180)
chr1 (2-144)||(13007009-13007151)
chr1 (2-144)||(13204268-13204410)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 13244761 - 13245111
Alignment:
Q  1 gttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgca 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244761 gttcaaatgaaaatggttgcagcttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgca 13244860  T
Q  101 tgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttttgtt 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244861 tgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttttgtt 13244960  T
Q  201 gctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctctctgtgttacaacaaacgaataaaatcctcaatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13244961 gctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctctgtgtgttacaacaaacgaataaaatcctcaatgtt 13245060  T
Q  301 tggaattgtgtatttgttacgtgatatatttaattagttgttacgcctttg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13245061 tggaattgtgtatttgttacgtgatatatttaattagttgttacgcctttg 13245111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 30368348 - 30368491
Alignment:
Q  1 gttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgca 100  Q
    ||||||||||| |||||||||||| | ||||| |||||||||| |||| |||| |||||||||||||||||||| |  ||  ||||| ||||| || | |    
T  30368348 gttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccctagggcttctgttgtcctttgaa 30368447  T
Q  101 tgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga 144  Q
    |||| || ||||| || ||| | || | ||||||||||||||||    
T  30368448 tgaaacatggcttgaacgtcaaggttactaaaagatgcatttga 30368491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 13086059 - 13085911
Alignment:
Q  1 gttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgca 100  Q
    |||||||||||||||||||||||| || |||| |||||||||| |||| | || |||||||||||  ||||||| |  |||  |||||||||  | ||||    
T  13086059 gttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaagagtttctattgttctccgca 13085960  T
Q  101 tgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataa 149  Q
    || | || || || || ||| |||| ||||||||||| |||||||||||    
T  13085959 tggaacatggattcaaagtcaaagttagtaaaagatgaatttgatataa 13085911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13094350 - 13094278
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 74  Q
    |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||||||||||    
T  13094350 ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaac 13094278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 13100952 - 13100812
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat 101  Q
    |||||||||| ||||| |||||| |||||||   |||||||| |||| |||||||||||||||||||| |||| | ||    |||| ||||  ||| |||    
T  13100952 ttcaaatgaagatggtcgcagctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttcttttgttcttcacat 13100853  T
Q  102 gaagcacggcttaaaggtcgaagtcagtaaaagatgcattt 142  Q
    ||| || ||||| |||||| |||||| ||||||||||||||    
T  13100852 gaaacatggcttgaaggtcaaagtcactaaaagatgcattt 13100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 13070417 - 13070489
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 74  Q
    |||||||||| ||||| |||||| |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13070417 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13070489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13129779 - 13129707
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 74  Q
    |||||||||| ||||| |||||| |||||||   |||||||| |||| |||||||||||||||||||||||||    
T  13129779 ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaac 13129707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 13161472 - 13161400
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaac 74  Q
    |||||||||| ||||| |||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||||    
T  13161472 ttcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaac 13161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 19279409 - 19279473
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcac 66  Q
    ||||||||||||||||||||||| || | || ||||||||||||||| |||| ||||||||||||    
T  19279409 ttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcac 19279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 13271537 - 13271474
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtca 65  Q
    |||||||||||||||||||||||||| | || |||||||||| |||| | ||||||||||||||    
T  13271537 ttcaaatgaaaatggttgcagcttctgtattatggaagtttcacatacatgtggtggaaggtca 13271474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 12964115 - 12964180
Alignment:
Q  1 gttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcac 66  Q
    |||||||||||||||||||| |||  | ||||||||||||||| |||| | |||||||||||||||    
T  12964115 gttcaaatgaaaatggttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac 12964180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 13007151 - 13007009
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat 101  Q
    |||||||||| ||||| |||||  |||||||    ||||||| |||||||||||||| |||||||||| |||| | ||    |||| ||||  ||| |||    
T  13007151 ttcaaatgaagatggtcgcagcagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttcttttgttcttcacat 13007052  T
Q  102 gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga 144  Q
    ||| || ||||| |||||  |||||| ||||||||||||||||    
T  13007051 gaaacatggcttgaaggttaaagtcactaaaagatgcatttga 13007009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 13204410 - 13204268
Alignment:
Q  2 ttcaaatgaaaatggttgcagcttctttgttgtggaagtttcgcataaaggtggtggaaggtcaccctgtaacgctgagaacttctattgtcgttcgcat 101  Q
    |||||||||| ||||| |||||| |||||||   ||| |||| ||||||| | |||||||||||||||||||| |  |  | |||| ||||  ||| |||    
T  13204410 ttcaaatgaagatggtcgcagctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaaagatttcttttgttcttcacat 13204311  T
Q  102 gaagcacggcttaaaggtcgaagtcagtaaaagatgcatttga 144  Q
    |||  | || ||||||||  |||||| ||||||||||||||||    
T  13204310 gaaatatggtttaaaggttaaagtcactaaaagatgcatttga 13204268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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