View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4548-Insertion-3 (Length: 299)

Name: NF4548-Insertion-3
Description: NF4548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4548-Insertion-3
NF4548-Insertion-3
[»] chr1 (1 HSPs)
chr1 (8-299)||(42089236-42089527)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 299
Target Start/End: Original strand, 42089236 - 42089527
Alignment:
Q  8 aatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaataattatattattctataatgcgtgggtgagtgat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42089236 aatttagtgattatcatgatttggttatttcgttaatgtaaagatacatgaaagggaacaagaaatcattatattattctataatgcgtgggtgagtgat 42089335  T
Q  108 ctcaaagaaacataactgagacggcacggcacacattgggaagatttcagttggagcataataattaaatatatatgatgagtttggaaaattagctttg 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42089336 ctcaaagaaacataactgggacggcacggcacacattgggaagatttcagttggagcataataattaaatatatatgatgagtttggaaaattagctttg 42089435  T
Q  208 aagattaataaaatacattttgtgcattcacgtggtcataataaacctgttggttatgaattatgcacatgaagacttcatcttttttcggg 299  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42089436 aagattaataaaatacattttgtgcattcacgtgatcataataaacctgttggttatgaattatgcacatgaagacttcatcttttttcggg 42089527  T

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