View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4548-Insertion-4 (Length: 182)
Name: NF4548-Insertion-4
Description: NF4548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4548-Insertion-4 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0781 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 171; Significance: 4e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 4e-92
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 2215815 - 2215641
Alignment:
| Q |
8 |
caatctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215815 |
caatctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
2215716 |
T |
|
| Q |
108 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttca |
182 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2215715 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttca |
2215641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 2217070 - 2216980
Alignment:
| Q |
75 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
165 |
Q |
| |
|
|||||||||| |||| || |||||| | || ||||| ||||||||||||| ||||||||||| |||| ||| ||||| ||||| ||||||| |
|
|
| T |
2217070 |
tgcacacatgcgtgcttgtgtgcgtgcgtcaatgtgagtgttgtgtccttgtattcttttacaaataattttatagtatattacaattttg |
2216980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: scaffold0781
Description:
Target: scaffold0781; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 4272 - 4098
Alignment:
| Q |
8 |
caatctactcgggagattcaattgttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcacacatgtgtgcatgcgtgcgtacatccat |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4272 |
caatctactcgggagattcaattcttcctatcaagaggtagaatccgatgggcgtggacaacagatatgcaaaaatgtgtgcatgcgtgcgtacatccat |
4173 |
T |
|
| Q |
108 |
gtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttgaaaattgaatattttca |
182 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4172 |
gtgcgtgttgtgtccttttatttttttacgaatattttcatagtgtattataattttgaaaattgaatattttca |
4098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0781; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 5526 - 5437
Alignment:
| Q |
75 |
tgcacacatgtgtgcatgcgtgcgtacatccatgtgcgtgttgtgtccttctattcttttacgaatattttcatagtgtattataattttg |
165 |
Q |
| |
|
|||||||||| |||| || |||||| | | |||||| ||||||||||||| ||||||||||| |||| ||| ||||| ||||| ||||||| |
|
|
| T |
5526 |
tgcacacatgcgtgcttgtgtgcgtgcgttcatgtgagtgttgtgtccttgtattcttttac-aataattttatagtatattacaattttg |
5437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University