View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-10 (Length: 410)
Name: NF4549-Insertion-10
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 205 - 410
Target Start/End: Original strand, 9821130 - 9821335
Alignment:
| Q |
205 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821130 |
atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
9821229 |
T |
|
| Q |
305 |
aagtcaactagtaaagtaaaatactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
404 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821230 |
aagtcaactagtaaagtaaactactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttgaagca |
9821329 |
T |
|
| Q |
405 |
atttcg |
410 |
Q |
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|||||| |
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| T |
9821330 |
atttcg |
9821335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 9820320 - 9820513
Alignment:
| Q |
8 |
catagatacacttaggaatctgtcacatgctcgcgagaaaatgaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9820320 |
catagatacacttaggaatctgtcacatgctcgcgagaaaatgagggccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcag |
9820419 |
T |
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| Q |
108 |
acatatttctaccacaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
201 |
Q |
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| T |
9820420 |
acatatttctaccaaaaagatcaacttaactcacagtaaagtaatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
9820513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 38873994 - 38874145
Alignment:
| Q |
50 |
gaggtccatcagtcactggaaaagcaaagataaaatgcaacaatgatcttagaatcagacatatttctaccacaaagatcaacttaactcacagtaaagt |
149 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| | |||| |
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| T |
38873994 |
gagggccatcagtcactggaaaagtaaagataaaatgcaacaatgatctcagaatcatacgtatttctaccacaaagatcaactcaactcacaatgaagt |
38874093 |
T |
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| Q |
150 |
aatgacagtatgggttcaaaatgtatgtttcactaacaaatataaacttacc |
201 |
Q |
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||||||||||| |||||| |||||||||||||||| ||||||||||||||| |
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| T |
38874094 |
aatgacagtataagttcaagatgtatgtttcactaagaaatataaacttacc |
38874145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 205 - 307
Target Start/End: Original strand, 38875382 - 38875481
Alignment:
| Q |
205 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
304 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
38875382 |
atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag |
38875478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 38873883 - 38873924
Alignment:
| Q |
11 |
agatacacttaggaatctgtcacatgctcgcgagaaaatgag |
52 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38873883 |
agatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38873924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Original strand, 38875620 - 38875693
Alignment:
| Q |
326 |
tactaaaaaatgatgtcaacaatcaaaagcagaacattcaattaatactacatcctttctcacataaagttttg |
399 |
Q |
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||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |||| |||||||| |
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| T |
38875620 |
tactaaaaatcgatgtcaacaatcaaaagtggagcattcaattaatattacatcctttcacacaacaagttttg |
38875693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 323
Target Start/End: Complemental strand, 38693718 - 38693599
Alignment:
| Q |
205 |
atcatatggagcactgcttgacgtaaatacaaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag |
304 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||| || |||| ||||||||||||||||| |
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| T |
38693718 |
atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag |
38693619 |
T |
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| Q |
305 |
aa-gtcaactagtaaagtaa |
323 |
Q |
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|| | |||||||||||||| |
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| T |
38693618 |
aaggaaaactagtaaagtaa |
38693599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 38694320 - 38694279
Alignment:
| Q |
11 |
agatacacttaggaatctgtcacatgctcgcgagaaaatgag |
52 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38694320 |
agatgcacttaggaatctgtcacatgctcgcgagaaaatgag |
38694279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 38694203 - 38694151
Alignment:
| Q |
55 |
ccatcagtcactggaaaagcaaa-gataaaatgcaacaatgatcttagaatca |
106 |
Q |
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||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |
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| T |
38694203 |
ccatcagtcactggaaaggaaaacgataaaatgcaacaatgatcttagaatca |
38694151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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