View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-11 (Length: 246)
Name: NF4549-Insertion-11
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-11 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 16718748 - 16718980
Alignment:
| Q |
7 |
aatcattaatgccctgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctta |
106 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16718748 |
aatcattaatgcattgaatgaaaacatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctta |
16718847 |
T |
|
| Q |
107 |
ttaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgtaaaatccaaatagttctcaatttttat |
206 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16718848 |
ttaaaaataagagaaaccagatgtgtagtttgacagacagggaagaaaaactgaaagggacacgatcctatgtaaaatccaaatagttctcaatttttat |
16718947 |
T |
|
| Q |
207 |
tttcaaaaaatcttaacctttaattaaatctaa |
239 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |
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| T |
16718948 |
tttcaaaaagtcttaacctttaattaaatctaa |
16718980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 24565866 - 24565629
Alignment:
| Q |
7 |
aatcattaatgccctgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctt- |
105 |
Q |
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|||||||||| | |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
24565866 |
aatcattaatacgttgaatgaaaacatggaggtgatgaattaattttgtagagaggggttgtaacttgcaaca-attgtaactcaaagcataaattctta |
24565768 |
T |
|
| Q |
106 |
attaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgt-aaaatccaaatagttctcaattttt |
204 |
Q |
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|| |||||| |||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||||| |||||| ||||| |
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| T |
24565767 |
ataaaaaattaaagaaaccagacgtgtagtttgac--acagggaagaaaacctgaaagggacacgatcgtgtgtaaaaatccaaatacttctcatttttt |
24565670 |
T |
|
| Q |
205 |
attttcaaaaaatcttaacctttaattaaatctaatggtat |
245 |
Q |
| |
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||||| ||||||||| |||| |||||||||||||||||||| |
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| T |
24565669 |
attttaaaaaaatctaaaccattaattaaatctaatggtat |
24565629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 7 - 245
Target Start/End: Complemental strand, 24606902 - 24606665
Alignment:
| Q |
7 |
aatcattaatgccctgaatgaaaatatggaggtgatgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaagcataaattctt- |
105 |
Q |
| |
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|||||||||| | |||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
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| T |
24606902 |
aatcattaatacgttgaatgaaaacatggaggtgatgaattaattttgtagagaggggttgtaacttgcaaca-attgtaactcaaagcataaattctta |
24606804 |
T |
|
| Q |
106 |
attaaaaataaaagaaaccagatgtgaagtttgacagacagggaagaaaaactgaaagggacacgatcctatgt-aaaatccaaatagttctcaattttt |
204 |
Q |
| |
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|| |||||| |||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||||| |||||| ||||| |
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| T |
24606803 |
ataaaaaattaaagaaaccagacgtgtagtttgac--acagggaagaaaacctgaaagggacacgatcgtgtgtaaaaatccaaatacttctcatttttt |
24606706 |
T |
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| Q |
205 |
attttcaaaaaatcttaacctttaattaaatctaatggtat |
245 |
Q |
| |
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||||| ||||||||| |||| |||||||||||||||||||| |
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|
| T |
24606705 |
attttaaaaaaatctaaaccattaattaaatctaatggtat |
24606665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 36611421 - 36611486
Alignment:
| Q |
180 |
aaaatccaaatagttctcaatttttattttcaaaaaatcttaacctttaattaaatctaatggtat |
245 |
Q |
| |
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|||||||||||| |||||| |||||||||| ||||||||| |||| |||||||||||||||||||| |
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|
| T |
36611421 |
aaaatccaaatatttctcattttttattttaaaaaaatctaaaccattaattaaatctaatggtat |
36611486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 53242775 - 53242722
Alignment:
| Q |
192 |
gttctcaatttttattttcaaaaaatcttaacctttaattaaatctaatggtat |
245 |
Q |
| |
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|||||||| |||||||||||| ||||||||||| || ||| |||| |||||||| |
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|
| T |
53242775 |
gttctcaaattttattttcaataaatcttaaccattgattcaatcaaatggtat |
53242722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 40584163 - 40584111
Alignment:
| Q |
41 |
atgaattaattttgtagagaggagtggtaacttgcaacagattgtaactcaaa |
93 |
Q |
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|||||| |||||||| |||| ||||||| |||| ||||| ||||||||||||| |
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| T |
40584163 |
atgaatcaattttgttgagacgagtggttacttacaacaaattgtaactcaaa |
40584111 |
T |
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