View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-12 (Length: 213)
Name: NF4549-Insertion-12
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 48438865 - 48439072
Alignment:
| Q |
8 |
attcctactgcaatggagcagttacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctag |
107 |
Q |
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| T |
48438865 |
attcctactgcaatggagcagatacagaagtttccaattgatgtcaacacctaatagaatccaatcaaataatatccaaagattagtccatatagtctag |
48438964 |
T |
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| Q |
108 |
agtcgtcgaataaatcaaattaagaaaacacttgctagtaacttatacaaaact--nnnnnnnncacaaaagtgtaccttttggaagtgaccaacattgt |
205 |
Q |
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| T |
48438965 |
agtcgtcgaataaatcaaattaagaaaacacttgctagtaacttatacaaaactaaaaaaaaaacacaaaagtgtaccttttggaagtgaccaacattgt |
48439064 |
T |
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| Q |
206 |
tagtgcta |
213 |
Q |
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|||||||| |
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| T |
48439065 |
tagtgcta |
48439072 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 21982253 - 21982307
Alignment:
| Q |
8 |
attcctactgcaatggagcagttacagaagtttccaattgatgtcaacacctaat |
62 |
Q |
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| T |
21982253 |
attcccacagcaattgagcagatacagaagttaccaatggatgtcaacacctaat |
21982307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 180 - 213
Target Start/End: Original strand, 21982572 - 21982605
Alignment:
| Q |
180 |
taccttttggaagtgaccaacattgttagtgcta |
213 |
Q |
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| T |
21982572 |
taccttttggaagtgaccaacattgttggtgcta |
21982605 |
T |
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