View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-14 (Length: 151)
Name: NF4549-Insertion-14
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-14 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 136; Significance: 3e-71; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 8 - 151
Target Start/End: Complemental strand, 30207 - 30064
Alignment:
| Q |
8 |
atacttaatctaaaaacgaatcaaaatactaaaattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagcta |
107 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30207 |
atacttaatctaaaaacgaatcaaaatactaatattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagcta |
30108 |
T |
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| Q |
108 |
cagtacaaggctcagttcctgaatttccagctgtacaatttcca |
151 |
Q |
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| T |
30107 |
cagtataaggctcagttcctgaatttccagctgtacaatttcca |
30064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 13348 - 13207
Alignment:
| Q |
10 |
acttaatctaaaaacgaatcaaaatactaaaattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctaca |
109 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13348 |
acttaatctaaaaatgaatcaaaatactaaaattacctggtatttctgtctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctaca |
13249 |
T |
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| Q |
110 |
gtacaaggctcagttcctgaatttccagctgtacaatttcca |
151 |
Q |
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| T |
13248 |
atataaggctcagttcctgaatttccagcagtacaatttcca |
13207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 122; E-Value: 6e-63
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 21085 - 20944
Alignment:
| Q |
10 |
acttaatctaaaaacgaatcaaaatactaaaattacctggtatttctctctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctaca |
109 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21085 |
acttaatctaaaaatgaatcaaaatactaaaattacctggtatttctgtctatatctttgagcagcagcagcatgtgacaatatcaaattgtgagctaca |
20986 |
T |
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| Q |
110 |
gtacaaggctcagttcctgaatttccagctgtacaatttcca |
151 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||| |
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| T |
20985 |
atataaggctcagttcctgaatttccagcagtacaatttcca |
20944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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