View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4549-Insertion-2 (Length: 1080)

Name: NF4549-Insertion-2
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4549-Insertion-2
NF4549-Insertion-2
[»] chr4 (9 HSPs)
chr4 (28-624)||(52766601-52767208)
chr4 (742-938)||(10119805-10120001)
chr4 (743-932)||(653592-653782)
chr4 (743-928)||(24490702-24490882)
chr4 (810-916)||(10318245-10318350)
chr4 (743-809)||(8082773-8082837)
chr4 (882-924)||(9763442-9763484)
chr4 (885-924)||(13711306-13711345)
chr4 (885-924)||(41393796-41393835)
[»] chr8 (13 HSPs)
chr8 (743-938)||(19430631-19430826)
chr8 (743-938)||(19566780-19566975)
chr8 (743-938)||(19436073-19436268)
chr8 (743-938)||(19572222-19572417)
chr8 (743-938)||(13584768-13584968)
chr8 (742-938)||(33616063-33616258)
chr8 (742-938)||(31031158-31031350)
chr8 (972-1021)||(19430531-19430580)
chr8 (972-1021)||(19566680-19566729)
chr8 (972-1021)||(33616306-33616354)
chr8 (973-1021)||(19435963-19436011)
chr8 (973-1021)||(19572112-19572160)
chr8 (980-1021)||(31031078-31031120)
[»] chr6 (15 HSPs)
chr6 (743-938)||(19478736-19478931)
chr6 (743-938)||(17289607-17289799)
chr6 (746-938)||(17280865-17281052)
chr6 (743-935)||(10485700-10485890)
chr6 (743-836)||(14450601-14450689)
chr6 (743-896)||(11956064-11956212)
chr6 (746-902)||(3902856-3903006)
chr6 (743-903)||(29326229-29326383)
chr6 (744-925)||(13660408-13660581)
chr6 (832-935)||(28696922-28697028)
chr6 (972-1021)||(19478631-19478682)
chr6 (885-924)||(34142717-34142756)
chr6 (885-924)||(34155333-34155372)
chr6 (885-924)||(34376400-34376439)
chr6 (859-936)||(22713936-22714013)
[»] chr2 (4 HSPs)
chr2 (743-934)||(42915165-42915356)
chr2 (743-938)||(5089676-5089872)
chr2 (846-935)||(39959774-39959863)
chr2 (813-896)||(43111535-43111618)
[»] chr3 (19 HSPs)
chr3 (743-938)||(53120119-53120314)
chr3 (743-938)||(13022647-13022842)
chr3 (743-938)||(33088616-33088811)
chr3 (743-938)||(38436270-38436465)
chr3 (771-938)||(20811010-20811177)
chr3 (743-935)||(26929313-26929498)
chr3 (782-920)||(26962640-26962774)
chr3 (743-891)||(11777219-11777360)
chr3 (972-1021)||(53120016-53120065)
chr3 (811-903)||(6025710-6025802)
chr3 (978-1021)||(38436507-38436550)
chr3 (743-836)||(3448669-3448759)
chr3 (981-1021)||(20810928-20810968)
chr3 (972-1019)||(33088859-33088907)
chr3 (853-928)||(2616921-2616996)
chr3 (885-924)||(3476364-3476403)
chr3 (885-924)||(4117122-4117161)
chr3 (889-928)||(25023431-25023470)
chr3 (885-924)||(54271255-54271294)
[»] chr1 (12 HSPs)
chr1 (743-938)||(26650428-26650622)
chr1 (743-938)||(38734724-38734919)
chr1 (740-938)||(39746671-39746869)
chr1 (743-938)||(13891403-13891598)
chr1 (743-924)||(31289367-31289547)
chr1 (743-887)||(14582397-14582541)
chr1 (742-938)||(10106639-10106836)
chr1 (743-836)||(5602170-5602263)
chr1 (743-928)||(12179309-12179494)
chr1 (846-938)||(19406284-19406376)
chr1 (885-924)||(48246144-48246183)
chr1 (972-1021)||(38734637-38734687)
[»] chr7 (15 HSPs)
chr7 (743-938)||(28291842-28292037)
chr7 (743-938)||(7357932-7358127)
chr7 (743-938)||(33226924-33227113)
chr7 (743-934)||(24528992-24529183)
chr7 (743-890)||(9973915-9974062)
chr7 (743-901)||(47762348-47762497)
chr7 (743-801)||(10437398-10437456)
chr7 (743-801)||(10451108-10451166)
chr7 (972-1021)||(28292085-28292134)
chr7 (979-1021)||(24528904-24528946)
chr7 (885-924)||(16538845-16538884)
chr7 (885-924)||(16626778-16626817)
chr7 (885-924)||(17496036-17496075)
chr7 (885-924)||(17557139-17557178)
chr7 (885-924)||(43893478-43893517)
[»] scaffold0132 (2 HSPs)
scaffold0132 (743-923)||(2421-2601)
scaffold0132 (743-923)||(10381-10561)
[»] scaffold0011 (3 HSPs)
scaffold0011 (743-938)||(2224-2420)
scaffold0011 (743-915)||(7501-7674)
scaffold0011 (973-1021)||(2113-2162)
[»] chr5 (5 HSPs)
chr5 (743-938)||(13581981-13582177)
chr5 (742-938)||(14374722-14374918)
chr5 (743-938)||(7805671-7805867)
chr5 (885-924)||(24776231-24776270)
chr5 (885-924)||(36254453-36254492)
[»] scaffold0067 (1 HSPs)
scaffold0067 (743-935)||(33305-33491)
[»] scaffold0166 (1 HSPs)
scaffold0166 (885-924)||(13158-13197)
[»] scaffold0594 (1 HSPs)
scaffold0594 (887-924)||(8708-8745)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 28 - 624
Target Start/End: Complemental strand, 52767208 - 52766601
Alignment:
Q  28 gtgcctcagcttttggaggtaatttaaggatcaagtttggtcaatttttaggnnnnnnngcataatacttgggaattagtaactctctaaacgcttagct 127  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||    
T  52767208 gtgcctcagcttttggaggtaatttaagaatcaagtttggtcaatttttaggtttttttgcataatacttgggcattagtaactctctaaacgcttagct 52767109  T
Q  128 ctttgggggcaatgagagctgtcaagatagccaaagacaaaaactgaaataatttatagcttgagaaagactcgatgctt-atggttttagctttaattc 226  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52767108 ctttgggggcaatgagagctgttaagatagccaaagacaaaaactgaaataatttatagcttgagaaagactcgatgctttatggttttagctttaattc 52767009  T
Q  227 ctttgtggtggtgccttggcagatagggaacaattgtatttccatgtcttcctatatgaacttcgtggaatctcacatacataggaaatgcaatagtttt 326  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  52767008 ctttgtggtggtgccttggcagatatggaacaattgtatttccatgtcttcctatatgaacttcgtggtatctcacatacataggaaatgcaatagtatt 52766909  T
Q  327 gctgacatgctagcttgaattcttttgtctatcacttttccattcctatatctg----ttagggaagattatgttaaaaacaggctgggggtgccttgtt 422  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||| |||||||||||||    
T  52766908 gctgacaagctagcttgaattcttttgtctatcacttttccattcctatatctgttaattagggaagattatgttaaaaacaggctaggggtgccttgtt 52766809  T
Q  423 aatcaattttagtgtgctagcttctcgcttctcacctagtt-----nnnnnnnnnnntgataccaagtacccaa-nnnnnnnnnataaacattgtcattc 516  Q
    ||||||||||||||||||||||||| |||||||||||||||                |||||||||||||||||          |||||| |||||||||    
T  52766808 aatcaattttagtgtgctagcttcttgcttctcacctagttaaaaaaaaaaaaaaaatgataccaagtacccaattttttttttataaacgttgtcattc 52766709  T
Q  517 aaacatcacaaagtaaaacnnnnnnntcattttagatagacaacatagttgggtagagatatttatatgtcctgtcattgaaattataagtaacaaaaag 616  Q
    |||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  52766708 aaacatcacaaagtaaaacaaaaaaatcattttagatagataacatagttgggtagagatatttatatgtccggtcattgaaattataagtaacaaaaag 52766609  T
Q  617 agtaaaag 624  Q
    ||||||||    
T  52766608 agtaaaag 52766601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 742 - 938
Target Start/End: Original strand, 10119805 - 10120001
Alignment:
Q  742 atgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  10119805 atgttggaacactagttgaatctcgtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 10119904  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  10119905 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtacccttggggtacccacttttgtgaacgggtgaacgcttacaa 10120001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 743 - 932
Target Start/End: Complemental strand, 653782 - 653592
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  ||||||||||||||  | |||||||||||||||| |||||| |||     
T  653782 tgttggaacactagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 653683  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgc 932  Q
    ||  || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  653682 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgc 653592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 743 - 928
Target Start/End: Complemental strand, 24490882 - 24490702
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    ||| |||||||||||| ||| || || ||    
T  24490882 tgttggaacactagttaaatctagtgagaaaattggata-gaaaaacacaatgtaagaactagtgtg----tgtaacttaaaaatgtcccatattggaga 24490788  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtga 928  Q
    || ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||   |||| || |||| ||||||||||    
T  24490787 gccacaccaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttgaggtacctacatttgcgaacgggtga 24490702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 810 - 916
Target Start/End: Original strand, 10318245 - 10318350
Alignment:
Q  810 agtgtgtgacttaaaaatgttccacatcggtgagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacc 909  Q
    ||||||||| ||||||||||  ||||| | ||||| ||||||||||  ||||| |||||||||||| |   |||||||||||||||| ||||||  ||||    
T  10318245 agtgtgtgatttaaaaatgtctcacattgatgagccacaccaactaacaagtgattatataagggtgggatgacctccaagggtgtg-ccttggggtacc 10318343  T
Q  910 cactttt 916  Q
    |||||||    
T  10318344 cactttt 10318350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 743 - 809
Target Start/End: Original strand, 8082773 - 8082837
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtg 809  Q
    |||||||||||||||| | |||||||| ||| ||||||| ||||||||| |||||||||||||||||    
T  8082773 tgttggaacactagttaattctagtga-aaagttggata-gaaaaacactatgtaagaactagtgtg 8082837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 882 - 924
Target Start/End: Original strand, 9763442 - 9763484
Alignment:
Q  882 acctccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  9763442 acctccaagggtgtgcccttggggtacccacttttgtgaacgg 9763484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 13711345 - 13711306
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  13711345 tccaagggtgtgcccttggggtacccacttttgtgaacgg 13711306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 41393835 - 41393796
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  41393835 tccaagggtgtgcccttggggtacccacttttgtgaacgg 41393796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 2e-89; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 19430826 - 19430631
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 19430727  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19430726 gccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaa 19430631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 19566975 - 19566780
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 19566876  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19566875 gccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaa 19566780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 19436268 - 19436073
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 19436169  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  19436168 gccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaa 19436073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 19572417 - 19572222
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 19572318  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  19572317 gccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaa 19572222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 13584968 - 13584768
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-----cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatc 837  Q
    |||||||||||||||| |||||||||||||||||||||||||||||     |||||| |||||| ||||||||| |||||| |||||||||| ||||||     
T  13584968 tgttggaacactagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacatt 13584869  T
Q  838 ggtgagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttaca 937  Q
    ||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  13584868 ggtgagccacaccaactagaaagtgtttatatacgggtagagtgacatccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttaca 13584769  T
Q  938 a 938  Q
    |    
T  13584768 a 13584768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 742 - 938
Target Start/End: Original strand, 33616063 - 33616258
Alignment:
Q  742 atgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||||||  ||||| ||||    
T  33616063 atgttggaacattagttaaatctagtgagaaaattggataagaaaaatacaatataagaactagtgtgagtatgtggcttaaaaatgtctcacattggtg 33616162  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||||||||| ||||||| |||||||||||||    
T  33616163 agccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttgg-gtacccacttttatgaacggatgaacgcttacaa 33616258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 742 - 938
Target Start/End: Complemental strand, 31031350 - 31031158
Alignment:
Q  742 atgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  ||||| ||||    
T  31031350 atgttggaacactagttaaatctaatgagaaaattggataagaaaaacacattataagaactagtgtgagtgtgtgacttaaaaatgtctcacattggtg 31031251  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||| ||||||||||||||  || ||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||  ||||||||||||||    
T  31031250 agccacaccaactagaaa--gtatatataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaac--gtgaacgcttacaa 31031158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 972 - 1021
Target Start/End: Complemental strand, 19430580 - 19430531
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||| ||||||| |||| | |||||||||||||||    
T  19430580 cgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaa 19430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 972 - 1021
Target Start/End: Complemental strand, 19566729 - 19566680
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||| ||||||| |||| | |||||||||||||||    
T  19566729 cgggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaa 19566680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 972 - 1021
Target Start/End: Original strand, 33616306 - 33616354
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||||||    
T  33616306 cgggcttgggtggtgggtggaaaataatatatat-tttttgtcacttgaa 33616354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 973 - 1021
Target Start/End: Complemental strand, 19436011 - 19435963
Alignment:
Q  973 gggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    |||||||||||||||||| ||||||| |||| | |||||||||||||||    
T  19436011 gggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaa 19435963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 973 - 1021
Target Start/End: Complemental strand, 19572160 - 19572112
Alignment:
Q  973 gggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    |||||||||||||||||| ||||||| |||| | |||||||||||||||    
T  19572160 gggcttgggtcgtgggtgaaaaataaaatatatttttttgtcacttgaa 19572112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 980 - 1021
Target Start/End: Complemental strand, 31031120 - 31031078
Alignment:
Q  980 ggtcgtgggtggaaaataatata-tttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  31031120 ggtcgtgggtggaaaataatatattttttttttgtcacttgaa 31031078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 2e-89; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 19478931 - 19478736
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 19478832  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  19478831 gccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 19478736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 17289607 - 17289799
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||    
T  17289607 tgttggaacactagttgaatctagtgagaaaattggata-gaaaaacacaatgtaagaactagtgtg--tgtgtgacttaaaaatgtcccacattggtga 17289703  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || |||||||| || |||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||| |||| ||||| |||||||||    
T  17289704 gccacaccaacaagcaagtgtttatataagggtagagtgacatccaaggatgtgcccttggactacccacttttgcgaacaggtgagcgcttacaa 17289799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 746 - 938
Target Start/End: Original strand, 17280865 - 17281052
Alignment:
Q  746 tggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtgagct 845  Q
    ||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||||    ||||||||||||||||| ||||| |||||||     
T  17280865 tggaacattagttgaatctagtgagaaaattggata-gaaaaatagaatgtaagaactagtgtg----tgtgacttaaaaatgtttcacattggtgagcc 17280959  T
Q  846 acaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    | | ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||  ||||||||| |||||||||    
T  17280960 atatcaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttcgcgtacccacttttgcaaacgggtgagcgcttacaa 17281052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 743 - 935
Target Start/End: Complemental strand, 10485890 - 10485700
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaa-ttggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    |||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||| ||||    
T  10485890 tgttggaatactagttaaatctagtgagaaaaattggata-gaaaaacacaatgtaagaactagtgtg--tgtgagacttaaaaatgttccacattggtg 10485794  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctta 935  Q
    ||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||   |||| ||||||| |||  ||||| ||||||    
T  10485793 agccacaccaactagcaagtgtttatataagggtagagtgacatccaagggtgtgcccttgaggtacctacttttgcgaataggtgagcgctta 10485700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 743 - 836
Target Start/End: Original strand, 14450601 - 14450689
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacat 836  Q
    |||||||||||||||||||| ||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14450601 tgttggaacactagttgaatgtagt-----aattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 14450689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 743 - 896
Target Start/End: Original strand, 11956064 - 11956212
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||||| |||||||   || ||||||| ||||||  ||| |||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  11956064 tgttggaacactagttgattctagtgg--aagttggata-gaaaaatgcaaggtaagaactagtgtg--tgtatgacttaaaaatgttccacataggtga 11956158  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtg 896  Q
    || |||| ||||||||||||||||||||||||| | | ||||| ||||| ||||    
T  11956159 gccacactaactagaaagtgtttatataagggtggggtgacctacaaggatgtg 11956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 746 - 902
Target Start/End: Complemental strand, 3903006 - 3902856
Alignment:
Q  746 tggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtgagct 845  Q
    ||||| ||||||| | |||||||| ||||||||||| ||||||||| |||| ||||||||||||    || ||||||||||||| | |||| |||||       
T  3903006 tggaatactagttaattctagtga-aaaattggata-gaaaaacactatgtgagaactagtgtg----tgagacttaaaaatgtcctacattggtgaatc 3902913  T
Q  846 acaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttg 902  Q
    ||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||    
T  3902912 acaccaactagcaagtgtttatataagggtggggtgacctccaagggtgtgcccttg 3902856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 743 - 903
Target Start/End: Complemental strand, 29326383 - 29326229
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| | |||||||| ||| ||||||| ||||||||| ||||||||| ||||||| |||    ||||||||||||  ||||| |||||    
T  29326383 tgttggaacactagttaattctagtga-aaagttggata-gaaaaacactatgtaagaattagtgtgcgtg----acttaaaaatgtctcacattggtga 29326290  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttgg 903  Q
    |  ||||||||||| |||||||||||||||||| | | ||||||||||||| || ||||||    
T  29326289 ggcacaccaactagcaagtgtttatataagggtggggtgacctccaagggtatgtccttgg 29326229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 744 - 925
Target Start/End: Complemental strand, 13660581 - 13660408
Alignment:
Q  744 gttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtgag 843  Q
    ||||||||||||||| | |||||||   || ||||||| |||||||| || |||||||||||||||    |||||||||||||| |   | || ||||||    
T  13660581 gttggaacactagttaattctagtgg--aagttggata-gaaaaacataaggtaagaactagtgtg----tgtgacttaaaaatatcttatattggtgag 13660489  T
Q  844 ctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacggg 925  Q
    | |||| |||||| |||||||||||||||||| |   ||||||||| ||||||||||||| ||| || |||||| |||||||    
T  13660488 ccacactaactagcaagtgtttatataagggtgggatgacctccaaaggtgtgcccttgggatatcc-cttttgagaacggg 13660408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 832 - 935
Target Start/End: Original strand, 28696922 - 28697028
Alignment:
Q  832 cacatcggtgagctacaccaactagaaagtgtttat---ataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtga 928  Q
    ||||| ||||||| ||||||||||| ||||||||||   |||||||| | | |||||| |||||||||| |||||  ||||||||||||| |||| ||||    
T  28696922 cacattggtgagcaacaccaactagcaagtgtttattatataagggtggggtgacctctaagggtgtgcacttggggtacccacttttgtaaacgagtga 28697021  T
Q  929 acgctta 935  Q
     ||||||    
T  28697022 gcgctta 28697028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 972 - 1021
Target Start/End: Complemental strand, 19478682 - 19478631
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatattta--tttttgtcacttgaa 1021  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  19478682 cgggcttgggtcgtgggtggaaaataatatatatatttttttgtcacttgaa 19478631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 34142756 - 34142717
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  34142756 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34142717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 34155372 - 34155333
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  34155372 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 34376439 - 34376400
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  34376439 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34376400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 859 - 936
Target Start/End: Complemental strand, 22714013 - 22713936
Alignment:
Q  859 agtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttac 936  Q
    |||||||||||||| | |||| |||||| ||||||||| ||||||  |||||| ||||   ||||||||| |||||||    
T  22714013 agtgtttatataagtggagagtgacctctaagggtgtgtccttggggtacccagttttacaaacgggtgagcgcttac 22713936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 2e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 743 - 934
Target Start/End: Complemental strand, 42915356 - 42915165
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 42915257  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctt 934  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  42915256 gccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgctt 42915165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 5089872 - 5089676
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaa-tgttccacatcggtg 841  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||| ||||    
T  5089872 tgttgaaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacattggtg 5089773  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||| ||||||| |||||||||||||||||||| ||||| |||||| |||||||||||||||   |||||||||||||||||||||||||||||||||    
T  5089772 agccacaccaattagaaagtgtttatataaggatagagtgacctctaagggtgtgcccttgatgtacccacttttgtgaacgggtgaacgcttacaa 5089676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 846 - 935
Target Start/End: Complemental strand, 39959863 - 39959774
Alignment:
Q  846 acaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctta 935  Q
    ||||||||||  || ||||||||||||||| | | |||||||||||||||| ||||||  ||||| |||||| |||||||||||||||||    
T  39959863 acaccaactaacaaatgtttatataagggtggggtgacctccaagggtgtgtccttggggtacccgcttttgcgaacgggtgaacgctta 39959774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 813 - 896
Target Start/End: Original strand, 43111535 - 43111618
Alignment:
Q  813 gtgtgacttaaaaatgttccacatcggtgagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtg 896  Q
    ||||||||||||||||| ||| ||  |||||| ||||||||||| |||||||||||||||||| | | ||||| ||||||||||    
T  43111535 gtgtgacttaaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataagggtggggtgacctacaagggtgtg 43111618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 156; Significance: 3e-82; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 53120314 - 53120119
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 53120215  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||    
T  53120214 gccacaccaactagaaagtgtttatataagggtacagtgacctccaagggtgtgcccttggggtacccacttttgtgaacaggtgaacgcttacaa 53120119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 13022842 - 13022647
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||    
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 13022743  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  13022742 gccacaccaattagaaagtgtttatataagggaagagtgacctccaagggtgtgaccttggggtacccacttttgtgaacgggtgaacgcttacaa 13022647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 33088616 - 33088811
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  33088616 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 33088715  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| | |||||||||||||||||||    
T  33088716 gccaaaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttataaacgggtgaacgcttacaa 33088811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 38436270 - 38436465
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  38436270 tgttggagcaccagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacattggtga 38436369  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||| |||||| ||||||||||||||||||||||| |||| |||| ||||||| ||| |  |||||||||||||||||||||||||||||||||    
T  38436370 gccacatcaactaaaaagtgtttatataagggtagagtgaccaccaaaggtgtgctcttagggtacccacttttgtgaacgggtgaacgcttacaa 38436465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 771 - 938
Target Start/End: Complemental strand, 20811177 - 20811010
Alignment:
Q  771 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtgagctacaccaactagaaagtgtttatata 870  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | | ||| |||||| ||||||||||||||    
T  20811177 aaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatata 20811078  T
Q  871 agggtagagcgacctccaag-ggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    | ||||||| ||| ||||||  |||| |||||||  |||||||| || || ||||||||||||||||||    
T  20811077 aaggtagagtgacttccaagatgtgt-cccttggggtacccactcttttgcacgggtgaacgcttacaa 20811010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 743 - 935
Target Start/End: Complemental strand, 26929498 - 26929313
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||| ||||| | |||||| | ||||||||||| |||||||| ||||||||||||||||||      ||||||||||||||| ||||| |||||    
T  26929498 tgttggaacattagttaattctagtcaaaaaattggata-gaaaaacataatgtaagaactagtgtg------tgacttaaaaatgtttcacattggtga 26929406  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctta 935  Q
    | |||||||||||| |||||||||||||||||| | | |||||||||| ||||||||||||  |||||||||||| |||||||| | ||||||    
T  26929405 gttacaccaactagcaagtgtttatataagggtggggtgacctccaagtgtgtgcccttggggtacccacttttgcgaacgggtaagcgctta 26929313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 782 - 920
Target Start/End: Complemental strand, 26962774 - 26962640
Alignment:
Q  782 agaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtgagctacaccaactagaaagtgtttatataagggtagagcg 881  Q
    ||||||||||||||||| ||||||||||    ||||||||||||| ||  ||||| ||||||| |||||||||||||||||||||||||||||||||| |    
T  26962774 agaaaaacacaatgtaaaaactagtgtg----tgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtg 26962679  T
Q  882 acctccaagggtgtgcccttggaatacccacttttgtga 920  Q
    |||| |||||||||||||||||  |||||||||||||||    
T  26962678 accttcaagggtgtgcccttggggtacccacttttgtga 26962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 743 - 891
Target Start/End: Complemental strand, 11777360 - 11777219
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||| ||||| |||||||   || ||||||| ||||||||||  |||||||||||||||    |||||||||||||||| |||||| |||||    
T  11777360 tgttggaacactcgttgattctagtgg--aagttggata-gaaaaacacatggtaagaactagtgtg----tgtgacttaaaaatgtcccacattggtga 11777268  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagg 891  Q
    || |||| |||||| |||||||||||||||||||| | |||||||||||    
T  11777267 gccacactaactagcaagtgtttatataagggtagggtgacctccaagg 11777219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 972 - 1021
Target Start/End: Complemental strand, 53120065 - 53120016
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||    
T  53120065 cgggcttgggtcgtgggtggaaaataatatatatttttttgtcacttgaa 53120016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 811 - 903
Target Start/End: Complemental strand, 6025802 - 6025710
Alignment:
Q  811 gtgtgtgacttaaaaatgttccacatcggtgagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttgg 903  Q
    |||||||| ||||||||||  ||||| ||||||  |||| |||||| |||||||||||||||| | | | ||||||||||| |||||||||||    
T  6025802 gtgtgtgatttaaaaatgtctcacattggtgagtcacactaactagcaagtgtttatataaggatggggtgacctccaaggatgtgcccttgg 6025710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 978 - 1021
Target Start/End: Original strand, 38436507 - 38436550
Alignment:
Q  978 tgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    |||||||||||||||||||||||||| | |||||||||||||||    
T  38436507 tgggtcgtgggtggaaaataatatatatttttttgtcacttgaa 38436550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 743 - 836
Target Start/End: Complemental strand, 3448759 - 3448669
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaa---tgtaagaactagtgtgagtgtgtgacttaaaaatgttccacat 836  Q
    |||| ||||||||||| ||||||||||||||||||||||   | |||||||   |||||||||||||    |||||||||||||||||||| |||||    
T  3448759 tgtttgaacactagttaaatctagtgagaaaattggata--gataacacaatattgtaagaactagt----gtgtgtgacttaaaaatgtttcacat 3448669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 981 - 1021
Target Start/End: Complemental strand, 20810968 - 20810928
Alignment:
Q  981 gtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  20810968 gtcgtgggtggaaaataatatatatttttttgtcacttgaa 20810928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 972 - 1019
Target Start/End: Original strand, 33088859 - 33088907
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatata-tttatttttgtcacttg 1019  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  33088859 cgggcttgggtggtgggtggaaaataatatattttttttttgtcacttg 33088907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 853 - 928
Target Start/End: Original strand, 2616921 - 2616996
Alignment:
Q  853 ctagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtga 928  Q
    |||| ||||||||||||||| |  ||| | ||| ||| |||||||||||||  |||||||||||| ||||||||||    
T  2616921 ctagtaagtgtttatataagtgaggagtggcctacaacggtgtgcccttggggtacccacttttgcgaacgggtga 2616996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 3476364 - 3476403
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  3476364 tccaagggtgtgcccttggggtacccacttttgtgaacgg 3476403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 4117122 - 4117161
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  4117122 tccaagggtgtgcccttggggtacccacttttgtgaacgg 4117161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 889 - 928
Target Start/End: Original strand, 25023431 - 25023470
Alignment:
Q  889 agggtgtgcccttggaatacccacttttgtgaacgggtga 928  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  25023431 agggtgtgcccttgggatacccacttttgcgaacgggtga 25023470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 54271294 - 54271255
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  54271294 tccaagggtgtgcccttggggtacccacttttgtgaacgg 54271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 6e-80; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 26650428 - 26650622
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 26650527  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||| ||||||||||||| |||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||    
T  26650528 gccacatcaactagaaagtg-ttatataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 26650622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 152; E-Value: 6e-80
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 38734919 - 38734724
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||||    
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccatattggtga 38734820  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || |||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  38734819 gccacaccaactagaaagtgtttatataagggtagagtgaccttcaaaggtgtgcccttaggatacccacttttgtgaacgggtgaacgcttacaa 38734724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 740 - 938
Target Start/End: Original strand, 39746671 - 39746869
Alignment:
Q  740 acatgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcgg 839  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||    
T  39746671 acatgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattgg 39746770  T
Q  840 tgagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||    |||||||||||||||||| ||||||||||||||    
T  39746771 tgagccacaccaactagaaagtgtttatataagggtagagtaacctccaaggatgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaa 39746869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 13891598 - 13891403
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| |||||    
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtaagtgtgtgacttaaaaatgtcccacattggtga 13891499  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||   |||||||||||||||||||||||| ||||||||    
T  13891498 gccacaccaactagaaagtgtttatataagggaagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaatgcttacaa 13891403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 743 - 924
Target Start/End: Complemental strand, 31289547 - 31289367
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  31289547 tgttggaacactagttgaatctagtgagaaaattggataagaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 31289449  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||| |||||    
T  31289448 gccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttagggtacccacttttgtaaacgg 31289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 743 - 887
Target Start/End: Complemental strand, 14582541 - 14582397
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  14582541 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtga 14582442  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctcc 887  Q
     | |||||||||||||| | ||||||||||||||||| |||||||    
T  14582441 accacaccaactagaaattttttatataagggtagagtgacctcc 14582397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 742 - 938
Target Start/End: Complemental strand, 10106836 - 10106639
Alignment:
Q  742 atgttggaacactagttgaatctagtgagaaaattggataagaaaaac-acaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggt 840  Q
    ||||||||||||||||| ||||||||||||||||||  | |||| ||  || |  || |||||||||||  |||||||||||||||||| |||||| |||    
T  10106836 atgttggaacactagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 10106737  T
Q  841 gagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
     ||  || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  10106736 tagtcaccccaactagtaagtgtttatataaggggagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 10106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 743 - 836
Target Start/End: Original strand, 5602170 - 5602263
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacat 836  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5602170 tgttggaacactagttgaatttagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacat 5602263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 743 - 928
Target Start/End: Complemental strand, 12179494 - 12179309
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||| |||||| | |||||| | ||||||||||| |||||||||||||||||||||||||||    |||||||||||||| | | |||| |||||    
T  12179494 tgttggaaccctagttaattctagtaaaaaaattggata-gaaaaacacaatgtaagaactagtgtg----tgtgacttaaaaatatcctacattggtga 12179400  T
Q  843 gc----tacaccaactagaaagtgtttatataagggtagagc-gacctccaagggtgtgcccttggaatacccacttttgtgaacgggtga 928  Q
    ||    |||||||||||| |||||||||||||||||| | |  ||||| |||| |||||||||||| ||||||||| ||||||||| ||||    
T  12179399 gccacgtacaccaactagcaagtgtttatataagggtggggatgacctgcaagtgtgtgcccttgggatacccactgttgtgaacgagtga 12179309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 846 - 938
Target Start/End: Original strand, 19406284 - 19406376
Alignment:
Q  846 acaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||  |||||||||| |||||||| |||||||||||||    
T  19406284 acaccaactagaaagtgtttatataagggtagagtgacccccaagggtgtgcctttggggtacccactttcgtgaacggatgaacgcttacaa 19406376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 48246144 - 48246183
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  48246144 tccaagggtgtgcccttggggtacccacttttgtgaacgg 48246183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 972 - 1021
Target Start/End: Complemental strand, 38734687 - 38734637
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatattta-tttttgtcacttgaa 1021  Q
    ||||||||||||||||||| ||||||| |||| || |||||||||||||||    
T  38734687 cgggcttgggtcgtgggtgaaaaataaaatatatattttttgtcacttgaa 38734637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 1e-77; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 28291842 - 28292037
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| || |||||    
T  28291842 tgttggaacactagttaaatctaattagaaaattggataagaaaaacacaatataagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtga 28291941  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  28291942 gctacaccaactagaaagtgtttatataagggtatagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 28292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 7358127 - 7357932
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| || |||||    
T  7358127 tgttggaacactagttgaatcttttgagaaaattggataagaaaaacacaatgcaagaactagtgtgagcgtgtgacttaaaaatgtcccatattggtga 7358028  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    || ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  7358027 gccacaccaattagaaagtgtttatataagggtagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaacgcttacaa 7357932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 33227113 - 33226924
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataag-aaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33227113 tgttggaacactagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacattggtg 33227014  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||  |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||       ||||||||||||||||||||||||||||||    
T  33227013 agtcacaccaactagaaagtgtttatataagggtagagtgacctccaagagtgtgccctt-------ccacttttgtgaacgggtgaacgcttacaa 33226924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 743 - 934
Target Start/End: Complemental strand, 24529183 - 24528992
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | | |||| |||||    
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaaaaacataatataagaactagtgtgagtgtgtgacttaaaaatatcctacattggtga 24529084  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctt 934  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  ||||||||||| ||||||| |||||||||    
T  24529083 gccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcctttggggtacccacttttatgaacggatgaacgctt 24528992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 8e-61
Query Start/End: Original strand, 743 - 890
Target Start/End: Complemental strand, 9974062 - 9973915
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||    
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattggtga 9973963  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaag 890  Q
    || |||||||||||||| |||| |||||||||||||| ||||||||||    
T  9973962 gccacaccaactagaaattgttaatataagggtagagtgacctccaag 9973915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 743 - 901
Target Start/End: Complemental strand, 47762497 - 47762348
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||| | | |||||||| ||||||| ||| |||||||||||||||||||||||||||      |||||||||||||||||||||  ||||    
T  47762497 tgttggaacactagctaagtctagtga-aaaattgaata-gaaaaacacaatgtaagaactagtgtg------tgacttaaaaatgttccacattagtga 47762406  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgccctt 901  Q
    || ||||||||||| || ||||||||||| ||| | | ||||||||||| |||||||||    
T  47762405 gccacaccaactagtaaatgtttatataaaggt-gggtgacctccaaggatgtgccctt 47762348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 743 - 801
Target Start/End: Complemental strand, 10437456 - 10437398
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10437456 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 10437398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 743 - 801
Target Start/End: Complemental strand, 10451166 - 10451108
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10451166 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaa 10451108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 972 - 1021
Target Start/End: Original strand, 28292085 - 28292134
Alignment:
Q  972 cgggcttgggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  28292085 cgggcttggatcgtgggtggaaaataatatatatttttttgtcacttgaa 28292134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 979 - 1021
Target Start/End: Complemental strand, 24528946 - 24528904
Alignment:
Q  979 gggtcgtgggtggaaaataatatatttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  24528946 gggtcgtgggtggaaaataatatatatttttttgtcacttgaa 24528904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 16538845 - 16538884
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  16538845 tccaagggtgtgcccttggggtacccacttttgtgaacgg 16538884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 16626817 - 16626778
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  16626817 tccaagggtgtgcccttggggtacccacttttgtgaacgg 16626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 17496075 - 17496036
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  17496075 tccaagggtgtgcccttggggtacccacttttgtgaacgg 17496036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 17557139 - 17557178
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  17557139 tccaagggtgtgcccttggggtacccacttttgtgaacgg 17557178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 43893517 - 43893478
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  43893517 tccaagggtgtgcccttggggtacccacttttgtgaacgg 43893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 145; Significance: 9e-76; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 743 - 923
Target Start/End: Original strand, 2421 - 2601
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||    
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttga 2520  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacg 923  Q
    || |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  2521 gccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacg 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 743 - 923
Target Start/End: Original strand, 10381 - 10561
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||    
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttga 10480  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacg 923  Q
    || |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||    
T  10481 gccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacg 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 145; Significance: 9e-76; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 2420 - 2224
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaa-tgttccacatcggtg 841  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||    
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggtg 2321  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  2320 agccacaccaactagaaagtgtttatataagggtattgtgacctccaagggtgtgcccttggggtacccacttttgtgaacggatgaacgcttacaa 2224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 743 - 915
Target Start/End: Complemental strand, 7674 - 7501
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgactta-aaaatgttccacatcggtg 841  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||    
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaaaaacacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggtg 7575  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttt 915  Q
    ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||  ||||||||||    
T  7574 agccacaccaactagaaagtgtttatataagggtagtgtgacctccaagggtgtgcccttggggtacccacttt 7501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 973 - 1021
Target Start/End: Complemental strand, 2162 - 2113
Alignment:
Q  973 gggcttgggtcgtgggtggaaaataatatat-ttatttttgtcacttgaa 1021  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||    
T  2162 gggcttgggtcgtgggtggaaaataatatatattttttttgtcacttgaa 2113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 3e-54; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 743 - 938
Target Start/End: Original strand, 13581981 - 13582177
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  ||||||||||||||  | |||||||||||||||| |||||| |||     
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 13582080  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||  || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  13582081 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 13582177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 742 - 938
Target Start/End: Complemental strand, 14374918 - 14374722
Alignment:
Q  742 atgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggt 840  Q
    ||||||||||||||||| |||||||||||||  |||||| |||| || ||| |  ||||||||||||||  |||||||||||||||||| |||||| |||    
T  14374918 atgttggaacactagttcaatctagtgagaagtttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggt 14374820  T
Q  841 gagctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
     ||  || |||||||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  14374819 tagtcaccccaactagaaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 14374722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 743 - 938
Target Start/End: Complemental strand, 7805867 - 7805671
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaac-acaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtg 841  Q
    |||||||||||||||| ||||||||||||||||||  | || | ||  || |  || |||||||||||  |||||||||||||||||| |||||| |||     
T  7805867 tgttggaacactagttcaatctagtgagaaaattgattgaggataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 7805768  T
Q  842 agctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgcttacaa 938  Q
    ||  || |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  7805767 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaa 7805671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 24776231 - 24776270
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  24776231 tccaagggtgtgcccttggggtacccacttttgtgaacgg 24776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Complemental strand, 36254492 - 36254453
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  36254492 tccaagggtgtgcccttggggtacccacttttgtgaacgg 36254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 96; Significance: 2e-46; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 743 - 935
Target Start/End: Original strand, 33305 - 33491
Alignment:
Q  743 tgttggaacactagttgaatctagtgagaaaattggataagaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacatcggtga 842  Q
    |||||||| ||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||||    |||||||||||||||| |||||| | |||    
T  33305 tgttggaatactagttaattctagtga-aaaattggata-gaaaaacacaatgtaagaactagtgtg----tgtgacttaaaaatgtcccacattgatga 33398  T
Q  843 gctacaccaactagaaagtgtttatataagggtagagcgacctccaagggtgtgcccttggaatacccacttttgtgaacgggtgaacgctta 935  Q
    || ||||||||||| ||||||||||||||| || | | || ||||||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  33399 gccacaccaactagcaagtgtttatataagagtggggtgagctccaagggtgtgccattgggatacccacttttgtgaacgggtgagcgctta 33491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 885 - 924
Target Start/End: Original strand, 13158 - 13197
Alignment:
Q  885 tccaagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  13158 tccaagggtgtgcccttggggtacccacttttgtgaacgg 13197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 887 - 924
Target Start/End: Original strand, 8708 - 8745
Alignment:
Q  887 caagggtgtgcccttggaatacccacttttgtgaacgg 924  Q
    |||||||||||||||||  |||||||||||||||||||    
T  8708 caagggtgtgcccttggggtacccacttttgtgaacgg 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University