View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-4 (Length: 966)
Name: NF4549-Insertion-4
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 853; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 8 - 966
Target Start/End: Complemental strand, 39744174 - 39743220
Alignment:
| Q |
8 |
aagaaccctaggactgtggcatgcgaaagataatctaatagaaacccaaacctgaaattnnnnnnnnttatgaactattggaatcggataattgagttat |
107 |
Q |
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| T |
39744174 |
aagaaccctaggactgtggcatgtgaaagataatctaatagaaacccaaacctgaaattaaaaaaaattatgaactattggaatcggataattgagttat |
39744075 |
T |
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| Q |
108 |
tagacgatgatttgataagtggaaataagaataagannnnnnnaagttaacttatttgaatttatctaccggtaaaagtacttccataactctctacgag |
207 |
Q |
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| T |
39744074 |
tagacgatgatttggtaagtggaaataagaataatatttttttaagttaacttatttgagtttatctaccggtaaaagtacttccataactctttacgag |
39743975 |
T |
|
| Q |
208 |
agtttataaaagaatgttatgatatttccataaattattttcaacttattttcataaagtattctgaataacttatatgaaaacagcgtgaatgtgtttt |
307 |
Q |
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| T |
39743974 |
agtttataaaagaatgttatgatattttcataaattattttcaacttattttcataaagtattccgaataacttatatgaaaacagcgtgaatgtatttt |
39743875 |
T |
|
| Q |
308 |
atattttgttattgaaataacttattcataaacaattatgccataagatgacacatatacctgaagaatccgaaagcaacttggaaaacaccagtaaaaa |
407 |
Q |
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| T |
39743874 |
atattttgttattgaaataacttatacataaacaattatgcgataagatgacacatatacctcaagaatccgaaagcaacttggaaaacaccagtaaaaa |
39743775 |
T |
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| Q |
408 |
atgttgcagtcaaaacaagatgagtgtaagctatggaatcatttataggatctttcaatgtttgaatcattgaagaaagtagcagtgaatccacagttga |
507 |
Q |
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| T |
39743774 |
atgttgcagtcaaaacaagatgagtgtaagctatggaatcatttataggatctttcaatgtttgaatcattgaagaaagtagcagtgaatccacagttga |
39743675 |
T |
|
| Q |
508 |
aggtccaattaccacctctcttgaagttgctagcaaagcataaataagaggtggaacaatacttgtatctgagtaaataaataaaccatgcttaattttt |
607 |
Q |
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| T |
39743674 |
aggtccaattaccacctctcttgaagttgctagcaaagcataaataagaggtggaacaatacttgtatctgagtaaataaataaaccatgcttaattttt |
39743575 |
T |
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| Q |
608 |
cacctaattaattaaaagaaaacatagtgattttaaaatcaatgtgcatagcatttataaatcaatatttaacttacagaagccgtattcaggactcatc |
707 |
Q |
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| T |
39743574 |
cacctaa----ttaaaagaaaacatagtgattttaaaatcaatgtgcatagcatttataaatcaatatttaacttacagaagccgtattcaggactcatc |
39743479 |
T |
|
| Q |
708 |
ttcgccaaactcgcatttcccatcgcctgcagaacgaaaagcatcggtcttaataattctatgtaaaatgatcgttagtgccgcaattcttaaaatttca |
807 |
Q |
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| T |
39743478 |
ttcgccaaactcgcatttcccatcgcctgcagaacgaaaagcatcggtcttaataattctatgtaaaatgatcgttagtgccgcaattcttaaaatttca |
39743379 |
T |
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| Q |
808 |
catgtcacaactatgaactatatattaatgtaacttgatttatttataattaaacctgtggaatagcaaagattgcaaggacaagaccagccaagacatc |
907 |
Q |
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| T |
39743378 |
catgtcacaactatgaactatatattaatgtaacttgatttatttataattaaacctgtggaatagcaaagattgcaaggacaagaccagccaagacatc |
39743279 |
T |
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| Q |
908 |
acacttaaacttttgaacattgtagtttttgaatgaattaaggattggaaaaacacact |
966 |
Q |
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| T |
39743278 |
acacttaaacttttgaacattgtagtttttgaatgaattaaggattggaaaaacacact |
39743220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 265
Target Start/End: Original strand, 1374585 - 1374614
Alignment:
| Q |
236 |
cataaattattttcaacttattttcataaa |
265 |
Q |
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| T |
1374585 |
cataaattattttcaacttattttcataaa |
1374614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 14209280 - 14209223
Alignment:
| Q |
274 |
aataacttatatgaaaacagcgtgaatgtgttttatattttgttattgaaataactta |
331 |
Q |
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| T |
14209280 |
aatagcttatatgaaaacagtttgaatttattttatcttttgttattgaaatagctta |
14209223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 35669045 - 35669004
Alignment:
| Q |
224 |
ttatgatatttccataaattattttcaacttattttcataaa |
265 |
Q |
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| T |
35669045 |
ttatgatatgtccataaattgttttcaacttatttccataaa |
35669004 |
T |
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