View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4549-Insertion-5 (Length: 960)

Name: NF4549-Insertion-5
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4549-Insertion-5
NF4549-Insertion-5
[»] chr3 (12 HSPs)
chr3 (608-960)||(12002410-12002763)
chr3 (129-245)||(15291460-15291575)
chr3 (262-345)||(11994628-11994711)
chr3 (174-244)||(1529165-1529236)
chr3 (712-794)||(40395125-40395207)
chr3 (174-245)||(52041384-52041455)
chr3 (174-246)||(1141742-1141814)
chr3 (174-245)||(39484808-39484880)
chr3 (174-244)||(22424370-22424440)
chr3 (129-205)||(48909790-48909865)
chr3 (175-221)||(37605421-37605468)
chr3 (178-245)||(42655772-42655839)
[»] chr4 (7 HSPs)
chr4 (710-839)||(18146294-18146423)
chr4 (27-245)||(6898614-6898823)
chr4 (175-244)||(12094856-12094925)
chr4 (174-241)||(9451245-9451312)
chr4 (174-244)||(24257703-24257773)
chr4 (129-227)||(7810064-7810162)
chr4 (179-245)||(4883589-4883655)
[»] chr7 (5 HSPs)
chr7 (27-244)||(39742156-39742364)
chr7 (710-839)||(25631748-25631876)
chr7 (710-835)||(48191513-48191635)
chr7 (129-244)||(48850726-48850840)
chr7 (174-244)||(20077342-20077412)
[»] chr5 (7 HSPs)
chr5 (710-839)||(43173528-43173657)
chr5 (710-793)||(37520420-37520503)
chr5 (129-243)||(22780015-22780128)
chr5 (175-244)||(37337323-37337393)
chr5 (175-245)||(26110687-26110758)
chr5 (175-245)||(11300764-11300835)
chr5 (178-244)||(31981793-31981859)
[»] scaffold0019 (1 HSPs)
scaffold0019 (243-333)||(108515-108605)
[»] chr8 (6 HSPs)
chr8 (175-245)||(42315341-42315412)
chr8 (175-245)||(45244285-45244356)
chr8 (175-244)||(23828343-23828413)
chr8 (173-244)||(3193173-3193244)
chr8 (174-247)||(26981032-26981105)
chr8 (212-245)||(7496757-7496790)
[»] chr6 (9 HSPs)
chr6 (175-245)||(31665629-31665700)
chr6 (175-242)||(15296147-15296215)
chr6 (129-244)||(26840415-26840529)
chr6 (174-245)||(31442516-31442587)
chr6 (720-787)||(27888198-27888265)
chr6 (174-244)||(826732-826802)
chr6 (129-246)||(26839987-26840103)
chr6 (174-244)||(21762022-21762092)
chr6 (174-241)||(30836481-30836548)
[»] chr2 (11 HSPs)
chr2 (129-245)||(6667462-6667577)
chr2 (772-839)||(28673525-28673592)
chr2 (174-245)||(32281485-32281556)
chr2 (175-245)||(28926074-28926144)
chr2 (129-245)||(28922372-28922486)
chr2 (711-778)||(18111704-18111771)
chr2 (174-244)||(38996520-38996590)
chr2 (158-241)||(21922337-21922420)
chr2 (174-245)||(22625387-22625458)
chr2 (177-245)||(29280084-29280152)
chr2 (174-244)||(38955840-38955910)
[»] chr1 (5 HSPs)
chr1 (174-244)||(15700721-15700791)
chr1 (175-248)||(46555498-46555572)
chr1 (174-244)||(22964007-22964077)
chr1 (178-233)||(3908833-3908888)
chr1 (198-244)||(24819183-24819229)
[»] scaffold0014 (3 HSPs)
scaffold0014 (248-307)||(141699-141758)
scaffold0014 (638-694)||(119016-119071)
scaffold0014 (912-960)||(119181-119229)
[»] scaffold0177 (2 HSPs)
scaffold0177 (638-694)||(29508-29563)
scaffold0177 (243-363)||(29835-29957)
[»] scaffold0308 (2 HSPs)
scaffold0308 (910-949)||(10494-10533)
scaffold0308 (632-694)||(10645-10707)
[»] scaffold0654 (1 HSPs)
scaffold0654 (905-954)||(98-147)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 608 - 960
Target Start/End: Complemental strand, 12002763 - 12002410
Alignment:
Q  608 ccaagtcaaaatatcaaattcctaagattaacatcacatgaccaaaaccagcacatgccacttgaagctaaggacttattcattgaatgaaacaataacc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12002763 ccaagtcaaaatatcaaattcctaagattaacatcacatgaccaaaaccagcacatgccacttgaagctaaggacttattcattgaatgaaacaataacc 12002664  T
Q  708 ggtagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatcggctaacccatat 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  12002663 ggtagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataaatgttcaaatggattctgtaataataaggtcggctaacccatat 12002564  T
Q  808 ttggcgactccagaagcaaccattcatggccaactctcctagaaaatttatctattctaaccttccactagacaccaattcattcactgcaggctatcag 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12002563 ttggcgactccagaagcaaccattcatggccaactctcctagaaaatttatctattctaaccttccactagacaccaattcattcactgcaggctatcag 12002464  T
Q  908 ccactatcacacttaaccttttcttaccattccttaacag-aaatccatcccct 960  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12002463 ccactatcacacttaaccttttcttaccattccttaacagaaaatccatcccct 12002410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 15291575 - 15291460
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |  | |||||||||||||||||    
T  15291575 aatgttgattaggattagcacttagaaggagttaatgctaatacaatggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaacaag 15291477  T
Q  229 ctttagtaagaaagata 245  Q
    |||||||||||||||||    
T  15291476 ctttagtaagaaagata 15291460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 11994711 - 11994628
Alignment:
Q  262 agtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaaaacaccgcttta 345  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| | |||||||| |||||||||||    
T  11994711 agtagcactggagaatagcaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaagacaccgcttta 11994628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 1529236 - 1529165
Alignment:
Q  174 atggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  1529236 atggagggaaaaaattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagat 1529165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 712 - 794
Target Start/End: Complemental strand, 40395207 - 40395125
Alignment:
Q  712 gctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatc 794  Q
    |||||||||||||||||||  ||||||||||||||||| || ||||||||||   |||||||| |||||||||||||||||||    
T  40395207 gctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataataagatc 40395125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 52041384 - 52041455
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||| ||||||||||||||||| |||||||| |  | ||||||||||| ||||||||||||||||||||||    
T  52041384 atggaaggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaagata 52041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 1141814 - 1141742
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagatac 246  Q
    |||||||||||||||||| |||| ||||| || |  | | |||||||||||||||||||||||||||||||||    
T  1141814 atggagggaaaatattagattaaaattagagtgaacaattgcttgaccaaacaagctttagtaagaaagatac 1141742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 39484808 - 39484880
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactag-tagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||||||||||||||||||||| | |||||| |  |  ||||||||||||||||||||||||||||||||||    
T  39484808 atggagggaaaatattaggttaaaactagggtgaacatatagcttgaccaaacaagctttagtaagaaagata 39484880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 22424370 - 22424440
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||| |||||||| |  | ||||||||||| | || ||||||||||||||||    
T  22424370 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagataaactttagtaagaaagat 22424440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 48909790 - 48909865
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggt 205  Q
    |||| ||||||| |||| || ||| ||||||||||  ||||||||||| |||||||| |||||||||||||||||||    
T  48909790 aatgctgattaggattagcatttagaaggagttaacactaatacaatgaagggaaaa-attaggttaagattagggt 48909865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 37605421 - 37605468
Alignment:
Q  175 tggagggaaaatattaggttaag-attagggttactagtagcttgacc 221  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  37605421 tggagggaaaatattaggttaagaattagggttactaatagcttgacc 37605468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 42655839 - 42655772
Alignment:
Q  178 agggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||||||||||| ||||| |||||||| |  | ||||||||||| ||||||||| ||||||||||||    
T  42655839 agggaaaatattatgttaaaattagggtgaacaatagcttgaccagacaagctttggtaagaaagata 42655772  T

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Target: chr4 (Bit Score: 130; Significance: 7e-67; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 710 - 839
Target Start/End: Complemental strand, 18146423 - 18146294
Alignment:
Q  710 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatcggctaacccatattt 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18146423 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatcggctaacccatattt 18146324  T
Q  810 ggcgactccagaagcaaccattcatggcca 839  Q
    ||||||||||||||||||||||||||||||    
T  18146323 ggcgactccagaagcaaccattcatggcca 18146294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 6898614 - 6898823
Alignment:
Q  27 ggaacattgaaaattggtaaaattaagctggcagacaaaagtcataaataacattggtatctagcaatttttgttctcctatgtatatacatttttgttt 126  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||  |||||||||||||||    
T  6898614 ggaacattgaaaattggtaaaattaggttggcagacaaaagtcataaataacgttggtatccagcaatttttgttctcccatg--tatacatttttgttt 6898711  T
Q  127 ccaatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaaca 226  Q
    |||||| | ||||  ||   |||    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||    
T  6898712 ccaatgcttattacgat---cac----aaggagttaatgctaacacaatggacggaaaatattaggttaagattagggttaccaatagcttgatcaaaca 6898804  T
Q  227 agctttagtaagaaagata 245  Q
    |||||||||||||||||||    
T  6898805 agctttagtaagaaagata 6898823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 12094856 - 12094925
Alignment:
Q  175 tggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  12094856 tggagggaaaatattaggttaaaattagggtttctaatagcttgaccaaacaagctttagtaagaaagat 12094925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 9451312 - 9451245
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaa 241  Q
    ||||||||||||||||||||||| |||||||| |  | ||||||||||| ||||||||||||||||||    
T  9451312 atggagggaaaatattaggttaaaattagggtgaacaatagcttgaccagacaagctttagtaagaaa 9451245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 24257773 - 24257703
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||| ||||||||||||||| |||||||| |  | | |||||||||||||||||||||||||||||||    
T  24257773 atggaggaaaaatattaggttaaaattagggtgaacaattgcttgaccaaacaagctttagtaagaaagat 24257703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 7810162 - 7810064
Alignment:
Q  129 aatgttgattagaattaacacttaaa--aggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaaca 226  Q
    |||||||||||| |||| |||||| |  |||||||||| | || ||||||||||||||| ||||||||||||||||||| |  | |||||||||||||||    
T  7810162 aatgttgattaggattagcacttatagaaggagttaatccgaa-acaatggagggaaaa-attaggttaagattagggtaaacaatagcttgaccaaaca 7810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 4883589 - 4883655
Alignment:
Q  179 gggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||| ||||||||   |||||||||  | |||||||||| |||||||||||||||| ||||||    
T  4883589 gggaaaatgttaggttagttttagggttaggaatagcttgacctaacaagctttagtaagtaagata 4883655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 2e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 39742156 - 39742364
Alignment:
Q  27 ggaacattgaaaattggtaaaattaagctggcagacaaaagtcataaataacattggtatctagcaatttttgttctcctatgtatatacatttttgttt 126  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||||||    
T  39742156 ggaacattgaaaattggtaaaattaagttggcagacaaaagtcataaataacgttggtatccagcaatttttgttctcctatg--tatacatttttgttt 39742253  T
Q  127 ccaatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaaca 226  Q
    |||||| | |||       ||  ||| |||||||||||||||| | ||| |||||||||||||||||||||||||||||||  | |||||||| ||||||    
T  39742254 ccaatgcttatt-------acgattagaaggagttaatgctaacataatcgagggaaaatattaggttaagattagggttatcaatagcttgatcaaaca 39742346  T
Q  227 agctttagtaagaaagat 244  Q
    ||||||||||||||||||    
T  39742347 agctttagtaagaaagat 39742364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 710 - 839
Target Start/End: Complemental strand, 25631876 - 25631748
Alignment:
Q  710 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatcggctaacccatattt 809  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25631876 tagctaaaataaaaaatggaccacatctaaatctaaaatcgggtcaagttataa-tgttcaaatggattctgtaataataagatcggctaacccatattt 25631778  T
Q  810 ggcgactccagaagcaaccattcatggcca 839  Q
    ||||||||||  ||||||||||||||||||    
T  25631777 ggcgactccatgagcaaccattcatggcca 25631748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 710 - 835
Target Start/End: Complemental strand, 48191635 - 48191513
Alignment:
Q  710 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaat-aataagatcggctaacccatatt 808  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||| |||||||||  ||||||||| ||    
T  48191635 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttc----ggattctgtaataaataagatcaactaacccatctt 48191540  T
Q  809 tggcgactccagaagcaaccattcatg 835  Q
    |||||||||||  ||||||||||||||    
T  48191539 tggcgactccacgagcaaccattcatg 48191513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 48850840 - 48850726
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||| ||||||| |||| |||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||||| |  | |||||||| || |||||    
T  48850840 aatgctgattaggattagcacttagaaggagttaatgctaacataatggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaag 48850742  T
Q  229 ctttagtaagaaagat 244  Q
    |||||| |||||||||    
T  48850741 ctttagaaagaaagat 48850726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 20077342 - 20077412
Alignment:
Q  174 atggagggaaaatattaggttaagattagggt-tactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||| |||||||| |  || | |||||||||||||||||||||||||||||||    
T  20077342 atggagggaaaatattaggttaaaattagggtatgatatt-gcttgaccaaacaagctttagtaagaaagat 20077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 6e-55; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 710 - 839
Target Start/End: Original strand, 43173528 - 43173657
Alignment:
Q  710 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagatcggctaacccatattt 809  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43173528 tagctaaaatgaaaaatggaccacatctaaaactaaagtcgggtcaagttataactattcaaatggattctgtaataataagatcggctaacccatattt 43173627  T
Q  810 ggcgactccagaagcaaccattcatggcca 839  Q
     |||||||| ||||||||||||||| ||||    
T  43173628 agcgactccggaagcaaccattcatagcca 43173657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 710 - 793
Target Start/End: Original strand, 37520420 - 37520503
Alignment:
Q  710 tagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataataagat 793  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  37520420 tagctcaaatgaaaaatggaccccatctaaaactaaaatcgggtcaagttctaactgttcaaatggattctgtaacaataagat 37520503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 129 - 243
Target Start/End: Original strand, 22780015 - 22780128
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||| ||||||  |||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |  | |||||||| || |||||    
T  22780015 aatgctgattatgattagcacttagaaggagttaatgctaacacaatggagggaaaa-attaggttaagattagggtaaacaatagcttgatcagacaag 22780113  T
Q  229 ctttagtaagaaaga 243  Q
    |||||| ||||||||    
T  22780114 ctttagaaagaaaga 22780128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 37337393 - 37337323
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||    
T  37337393 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagctttagtaagaaagat 37337323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 26110758 - 26110687
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||||| | |||||||||||  ||||||||||||||||| ||||||||||||||||    
T  26110758 tggagggaaaatattaggttaaaaattagggttacttatagcttgaccaaacaagttttagtaagaaagata 26110687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 11300764 - 11300835
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||||| | |||||||||||  |||||| |||| ||||| ||||||||||||||||    
T  11300764 tggagggaaaatattaggttaaaaattagggttacttatagcttcaccagacaagttttagtaagaaagata 11300835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 31981859 - 31981793
Alignment:
Q  178 agggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||| |||||| | |  | | |||||| ||||||||||||||||| ||||||    
T  31981859 agggaaaatattaggttaaaattaggttgaacaattgcttgatcaaacaagctttagtaaaaaagat 31981793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 63; Significance: 7e-27; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 243 - 333
Target Start/End: Original strand, 108515 - 108605
Alignment:
Q  243 atactctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaatagcagtaacacggctcgtaaaaaacaa 333  Q
    |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  108515 atacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatcaaaccaatagcagcaacacgcctcatcaaaaacaa 108605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 42315412 - 42315341
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  42315412 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 42315341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 45244285 - 45244356
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||||||||||    
T  45244285 tggagggaaaatattaggttaagaattagggttactaatagcttgaccagacaaactttagtaagaaagata 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 23828413 - 23828343
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||    
T  23828413 tggagggaaaatattaggttaaaaattagggttactaatagcttgaccaaacaagctctagtaagaaagat 23828343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 3193173 - 3193244
Alignment:
Q  173 aatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||||||||||||| |||| | | | || |  |||||||| |||||||||||||||||||||    
T  3193173 aatggagggaaaatattaggttaaaattaagatgaataattacttgaccagacaagctttagtaagaaagat 3193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 26981105 - 26981032
Alignment:
Q  174 atggagggaaaatattaggttaagattagggt-tactagtagcttgaccaaacaagctttagtaagaaagatact 247  Q
    ||||||| ||||||||||||||| |||||||| |  || | |||||| |||||||||||||||||||||||||||    
T  26981105 atggaggaaaaatattaggttaaaattagggtatgatatt-gcttgatcaaacaagctttagtaagaaagatact 26981032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 7496790 - 7496757
Alignment:
Q  212 tagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||| |||||||||||||||||||||||||    
T  7496790 tagcttgatcaaacaagctttagtaagaaagata 7496757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 31665629 - 31665700
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  31665629 tggagggaaaatattaggttaagaattagggttactaatagcttgaccaaacaagctttagtaagaaagata 31665700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 15296215 - 15296147
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaag 242  Q
    |||||||||||||||||||||| | |||||||||||  ||||||||| |||||||||||||||||||||    
T  15296215 tggagggaaaatattaggttaaaaattagggttacttatagcttgacaaaacaagctttagtaagaaag 15296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 26840529 - 26840415
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||||||||||| | | ||||||| |||||||||||| ||| |    |||||||||| | ||||||||||||||||||| |  | |||||||||||||||    
T  26840529 aatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaa-agtaggttaagattagggttaatgatggcttgaccaaacaag 26840431  T
Q  229 ctttagtaagaaagat 244  Q
    |||||| |||||||||    
T  26840430 ctttagaaagaaagat 26840415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 31442587 - 31442516
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||||||||||||||||||||| ||||||||   |  | ||||||||||||||||||||||||||||||||    
T  31442587 atggagggaaaatattaggttaaaattagggtatgtgattgcttgaccaaacaagctttagtaagaaagata 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 720 - 787
Target Start/End: Complemental strand, 27888265 - 27888198
Alignment:
Q  720 gaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataa 787  Q
    ||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||| || |||||    
T  27888265 gaaaaatggaccacatcaaaaactaaaattgggtcaagttctagctattcaaatggattatgaaataa 27888198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 826732 - 826802
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||| |||| ||| |  | ||||||||||| ||||| |||||||||||||||    
T  826732 atggagggaaaatattaggttaaaattaaggtgaacaatagcttgaccagacaagttttagtaagaaagat 826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 26840103 - 26839987
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||||||||||| | | ||||||| |||||||||||| ||| |    |||||||||| | ||||||||||||||||||| |  | |||||| |||||||     
T  26840103 aatgttgattaggaattacacttagaaggagttaatgttaagatttgggagggaaaa-agtaggttaagattagggttaatgatggcttgatcaaacaaa 26840005  T
Q  229 ctttagtaagaaagatac 246  Q
    |||||| |||||||||||    
T  26840004 ctttagaaagaaagatac 26839987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 21762092 - 21762022
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||| |||||||| |||||||| |  | |||||||| || ||||| |||||||||||||||    
T  21762092 atggagggaaaatagtaggttaaaattagggtgagcaatagcttgatcagacaagttttagtaagaaagat 21762022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 30836481 - 30836548
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaa 241  Q
    |||||||||||||||||| |||| |||||||| |  | | |||||| || ||||||||||||||||||    
T  30836481 atggagggaaaatattagattaaaattagggtgaacaattgcttgatcagacaagctttagtaagaaa 30836548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 6667577 - 6667462
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||| ||||||| |||| || ||| || |||||||||||||| |||||||||||||| ||||||||| ||||||||| |  | |||||||||||||||||    
T  6667577 aatgctgattaggattagcatttagaaagagttaatgctaatgcaatggagggaaaa-attaggttaggattagggtaaacaatagcttgaccaaacaag 6667479  T
Q  229 ctttagtaagaaagata 245  Q
    |||||| ||||||||||    
T  6667478 ctttagaaagaaagata 6667462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 772 - 839
Target Start/End: Original strand, 28673525 - 28673592
Alignment:
Q  772 atggattctgtaataataagatcggctaacccatatttggcgactccagaagcaaccattcatggcca 839  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||    
T  28673525 atggattctgtaataataagatcggctaacccatatttgacgactccagaagcaatcattcatagcca 28673592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 32281556 - 32281485
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  32281556 atggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagata 32281485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 28926144 - 28926074
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  28926144 tggagggaaaa-attaggttaagaattagggttactaatagcttgaccagacaagctttagtaagaaagata 28926074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 129 - 245
Target Start/End: Original strand, 28922372 - 28922486
Alignment:
Q  129 aatgttgattagaattaacacttaaaaggagttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaag 228  Q
    |||| ||||||| |||| |||||| || || |||||||||| |||||||| |||||| ||||||||||||||||||| |  | ||||||||||| ||| |    
T  28922372 aatgctgattaggattaccacttagaatga-ttaatgctaacacaatggatggaaaa-attaggttaagattagggtaaacaatagcttgaccagacatg 28922469  T
Q  229 ctttagtaagaaagata 245  Q
    |||||||||| ||||||    
T  28922470 ctttagtaagtaagata 28922486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 711 - 778
Target Start/End: Original strand, 18111704 - 18111771
Alignment:
Q  711 agctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggatt 778  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||| | || |||||||||    
T  18111704 agctaaaatgaaaaatggaccacatctaaaactaaaagcgagtcaagttgtaattattgaaatggatt 18111771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 38996520 - 38996590
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||| |||||||| ||   |||||||| || |||||||||||||||||||||    
T  38996520 atggagggaaaatattaggttaaaattagggtaacatatagcttgatcagacaagctttagtaagaaagat 38996590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 21922420 - 21922337
Alignment:
Q  158 agttaatgctaatacaatggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaa 241  Q
    |||||||||||| |  | |||||||||||||||||||||||||||||| | |  |||||||| || ||||||||||| ||||||    
T  21922420 agttaatgctaagattaaggagggaaaatattaggttaagattagggtaagttatagcttgatcagacaagctttagaaagaaa 21922337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 245
Target Start/End: Original strand, 22625387 - 22625458
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    ||||||||||||||||||||||| ||||||||  | | | ||||||||| ||||| ||||||||||||||||    
T  22625387 atggagggaaaatattaggttaaaattagggtatccaattgcttgaccagacaagttttagtaagaaagata 22625458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 29280152 - 29280084
Alignment:
Q  177 gagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagata 245  Q
    |||||||||||||||||||| |||||||| |  | |||||| | || ||||| ||||||||||||||||    
T  29280152 gagggaaaatattaggttaaaattagggtgaacaatagcttcatcagacaagttttagtaagaaagata 29280084  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 38955840 - 38955910
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||  ||||||||||  | ||| |||| || | ||||||||||||| |||||    
T  38955840 atggagggaaaatattaggttagaattagggttatcaatagtttgatcagataagctttagtaagtaagat 38955910  T

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Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 15700791 - 15700721
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  15700791 atggagggaaaatactaggttaaaattagggttactaatagcttgaccaaacaaactttagtaagaaagat 15700721  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 46555572 - 46555498
Alignment:
Q  175 tggagggaaaatattaggttaaga-ttagggttactagtagcttgaccaaacaagctttagtaagaaagatactc 248  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||||    
T  46555572 tggagggaaaatattaggttaagaattagggttactaatagcttgaccggacaagctttagtaataaagatactc 46555498  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 22964077 - 22964007
Alignment:
Q  174 atggagggaaaatattaggttaagattagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||| ||||||||||||||| |||||    
T  22964077 atggagggaaaatattaggttagaattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 3908833 - 3908888
Alignment:
Q  178 agggaaaatattaggttaagattagggttactagtagcttgaccaaacaagcttta 233  Q
    |||||||||| |||||||| ||||||||||| | |||||||| || ||||||||||    
T  3908833 agggaaaatagtaggttaaaattagggttaccaatagcttgatcagacaagcttta 3908888  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 24819229 - 24819183
Alignment:
Q  198 attagggttactagtagcttgaccaaacaagctttagtaagaaagat 244  Q
    |||||||||| || ||||||||||||||||||||| ||||| |||||    
T  24819229 attagggttagtaatagcttgaccaaacaagctttggtaagtaagat 24819183  T

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Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 141758 - 141699
Alignment:
Q  248 ctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatcaaaccaata 307  Q
    ||||||||||| |||||||||||||||||| | ||||||||| ||||||| |||||||||    
T  141758 ctatcaacaccaagagtagcactggagaatggcaaacaacattcttccataaaaccaata 141699  T

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Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 694
Target Start/End: Original strand, 119016 - 119071
Alignment:
Q  638 acatcacatgaccaaaaccagcacatgccacttgaagctaaggacttattcattgaa 694  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||| |||||||    
T  119016 acatcacatgaccaaatc-agcacatcccacttgaagctaaggacttatacattgaa 119071  T

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Target: scaffold0014; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 912 - 960
Target Start/End: Original strand, 119181 - 119229
Alignment:
Q  912 tatcacacttaaccttttcttaccattccttaacagaaatccatcccct 960  Q
    ||||||||||||||||| ||||||| ||| ||||||||||| |||||||    
T  119181 tatcacacttaacctttgcttaccactccataacagaaatctatcccct 119229  T

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Target: scaffold0177 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 694
Target Start/End: Complemental strand, 29563 - 29508
Alignment:
Q  638 acatcacatgaccaaaaccagcacatgccacttgaagctaaggacttattcattgaa 694  Q
    ||||||||| |||||| | |||||||||||||||||||||||||||||| |||||||    
T  29563 acatcacatcaccaaatc-agcacatgccacttgaagctaaggacttatacattgaa 29508  T

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Target: scaffold0177; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 29957 - 29835
Alignment:
Q  243 atactctatcaacaccgagagtagcactggagaatagaaaacaacatccttccatc--aaaccaatagcagtaacacggctcgtaaaaaacaaaacaccg 340  Q
    |||| ||||||| ||| ||||||||||| ||||| || ||||  ||||||||||||  | ||||||||||| |||||   || |||||||||    |||     
T  29957 atacactatcaataccaagagtagcactagagaacagcaaactgcatccttccatccaataccaatagcagcaacacacatcataaaaaacaggttacca 29858  T
Q  341 ctttatgaagtgcgtaaatatct 363  Q
    ||||||||||||||| |||||||    
T  29857 ctttatgaagtgcgtgaatatct 29835  T

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Target: scaffold0308 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 910 - 949
Target Start/End: Complemental strand, 10533 - 10494
Alignment:
Q  910 actatcacacttaaccttttcttaccattccttaacagaa 949  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  10533 actatcacacttaaccttttcttaccattcctgaacagaa 10494  T

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Target: scaffold0308; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 632 - 694
Target Start/End: Complemental strand, 10707 - 10645
Alignment:
Q  632 agattaacatcacatgaccaaaaccagcacatgccacttgaagctaaggacttattcattgaa 694  Q
    |||||||||| |||||||||||||||  ||||||| ||||||| |||||| |||| |||||||    
T  10707 agattaacattacatgaccaaaaccataacatgccgcttgaagataaggaattatacattgaa 10645  T

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Target: scaffold0654 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 905 - 954
Target Start/End: Original strand, 98 - 147
Alignment:
Q  905 cagccactatcacacttaaccttttcttaccattccttaacagaaatcca 954  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||||||||    
T  98 cagcaactaacacacttaacctttgcttaccattcctgaacagaaatcca 147  T

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