View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4549-Insertion-7 (Length: 850)
Name: NF4549-Insertion-7
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 667; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 7 - 697
Target Start/End: Complemental strand, 32096142 - 32095452
Alignment:
| Q |
7 |
aaatcgattgttaatcataacgctggaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccactattcttcttatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32096142 |
aaatcgattgttaatcataacgctggaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccattattcttcttatg |
32096043 |
T |
|
| Q |
107 |
gtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagatta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096042 |
gtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagatta |
32095943 |
T |
|
| Q |
207 |
ctgtataattagttactccaattttgatttattattggcactatttggtggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagag |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32095942 |
ctgtataattagttactccaattttgatttattattggcactatttggtggtagtcggtcgtatcttggtcattgtatcaagcctgtattagttaaagag |
32095843 |
T |
|
| Q |
307 |
ctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagact |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32095842 |
ctaatatatttatagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagact |
32095743 |
T |
|
| Q |
407 |
cagatggaaccggtaattcaggactgcagaaagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatga |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32095742 |
cagatggaaccggtaattcaggactgcagagagatggtgcaccaatttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatga |
32095643 |
T |
|
| Q |
507 |
atgtgtaagattttgtttaagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatc |
606 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32095642 |
atgtgtaagattttgttttagtgaatatttaatcttgtaacttgcttaaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatc |
32095543 |
T |
|
| Q |
607 |
actatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagagatcttg |
697 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32095542 |
agtatgaaaaataggcaaagggactctccagctttagtataaatagaggatcacactcttgtatcctttggttctctttatagaaatcttg |
32095452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 32 - 323
Target Start/End: Complemental strand, 32092035 - 32091741
Alignment:
| Q |
32 |
gaacccttgtttatagtctctgttgatttggttaataggacggttgccaagtaatgagccactattcttcttatggtatta---cttctgttgggcaatt |
128 |
Q |
| |
|
|||| |||||| ||| | ||| ||||||||||||||| || |||||||||| ||||||| ||| || |||||||||||||| ||||||||| | |||| |
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|
| T |
32092035 |
gaactcttgttcatactatctattgatttggttaatatgagggttgccaagcaatgagcgactgttattcttatggtattattacttctgttgtgaaatt |
32091936 |
T |
|
| Q |
129 |
atacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagattactgtataattagttactccaat |
228 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32091935 |
gtacttagtatttagctattcatggtggttagttaggaaattcattttataaccaatgcttggtcttggttaagattactgcataattagttactccaat |
32091836 |
T |
|
| Q |
229 |
tttgatttattattggcactatttggtggtagtcggtcgtatcttggccattgtatcaagcctgtattagttaaagagctaatatatttatagaa |
323 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
32091835 |
gttgatttattattgcaactatttggtggtagtcggtcgtatcttggtcaatgtatcaagcctgtatttgttaaagagctaatataattatagaa |
32091741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 453 - 673
Target Start/End: Complemental strand, 32089795 - 32089576
Alignment:
| Q |
453 |
ttggagatgtaattagaaggtaattcataaagtgaaagacgaagactcttatgaatgtgtaagattttgtttaagtgaatatttaatcttgtaacttgct |
552 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| |||| |||||||||||| ||||||||| |
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|
| T |
32089795 |
ttggagatgtaattagaaggtaattcatat-gtgaaagatgaagactcttatggatgcgtaagattttgttttagtggatatttaatcttttaacttgct |
32089697 |
T |
|
| Q |
553 |
taaaaattgagtggagcactaagcattgagtaagacacaagttgtgagcgaatcactatgaaaaataggcaaagggactctccagctttagtataaatag |
652 |
Q |
| |
|
|||||||| | || |||||||||||| ||||||||||||| ||||||| |||||| ||||||||||||| |||||||| ||||||||||||| ||||||| |
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|
| T |
32089696 |
taaaaattaactgcagcactaagcatcgagtaagacacaaattgtgagtgaatcattatgaaaaatagggaaagggacactccagctttagtttaaatag |
32089597 |
T |
|
| Q |
653 |
aggatcacactcttgtatcct |
673 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
32089596 |
aggatcacactcttgtatcct |
32089576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 699 - 843
Target Start/End: Complemental strand, 32095426 - 32095282
Alignment:
| Q |
699 |
tgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgatcaaatgtgtg |
798 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
32095426 |
tgttaattaatttattctgtctgatgaatatctgaattgcatctttctgttgaattaaagatttctgtgaaatcaaactcactgaccgaacgaatgtgtg |
32095327 |
T |
|
| Q |
799 |
gttacttgacattgacaacagggaatcaatatccgttatagtgac |
843 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32095326 |
gttacttgacattgacaacagggaatcaatatccgttatagtgac |
32095282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 313 - 412
Target Start/End: Complemental strand, 32091717 - 32091611
Alignment:
| Q |
313 |
tatttatagaattacggtgttggatcaccatgtg-------ccccatctcatggatttgaatttttgtttactgaaatgaaatggttaacttgtgcagac |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
32091717 |
tatttatagaattacggtgttggatcaccatgtggcatgtgccctatctcatggatttgaatttttgtttactgaaatgaaatggttaacctgtgtagac |
32091618 |
T |
|
| Q |
406 |
tcagatg |
412 |
Q |
| |
|
||||||| |
|
|
| T |
32091617 |
tcagatg |
32091611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 29887778 - 29887882
Alignment:
| Q |
99 |
ttcttatggtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggtcttggt |
198 |
Q |
| |
|
||||||||||||||| | | |||| |||| ||||| ||||||||||||||||||| |||| |||||||||||| |||||| |||||||||| ||||| |
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|
| T |
29887778 |
ttcttatggtattaccttttgtgggaaattgtactttgtatttagctattcatggtggttacataggaatttcataatatatctaatgcttggtattggt |
29887877 |
T |
|
| Q |
199 |
taaga |
203 |
Q |
| |
|
||||| |
|
|
| T |
29887878 |
taaga |
29887882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 29427907 - 29427872
Alignment:
| Q |
307 |
ctaatatatttatagaattacggtgttggatcacca |
342 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29427907 |
ctaatatattaatagaattacggtgttggatcacca |
29427872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 203
Target Start/End: Original strand, 29904017 - 29904125
Alignment:
| Q |
93 |
ctattcttcttatggtattacttctgttgggcaattatacttcgtatttagctattcatggtagttagttaggaatttcattttatatccaatgcttggt |
192 |
Q |
| |
|
||||| ||||||||||||| | || |||| |||| ||||| ||||||||||||||||| |||||| | |||||||||| | |||| | |||||||| |
|
|
| T |
29904017 |
ctattattcttatggtattgcctcctgtgggaaattgtactttgtatttagctattcatgatagttacat-ggaatttcataat-tatctactgcttggt |
29904114 |
T |
|
| Q |
193 |
cttggttaaga |
203 |
Q |
| |
|
||||||||||| |
|
|
| T |
29904115 |
cttggttaaga |
29904125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 29428098 - 29428029
Alignment:
| Q |
150 |
atggtagttagttaggaatttcattttatatccaatgcttggtcttggttaagattactgtataattagt |
219 |
Q |
| |
|
||||| |||||||||||| ||||| ||||| ||||||||| | || ||||||||| ||||| ||||||| |
|
|
| T |
29428098 |
atggttgttagttaggaaattcataatatattcaatgcttgttatttgttaagattgctgtaaaattagt |
29428029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 810 - 850
Target Start/End: Complemental strand, 32088285 - 32088244
Alignment:
| Q |
810 |
ttgacaacagggaatcaatatccgttatagtga-caataggg |
850 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
32088285 |
ttgacaacagggaatcgatatccgttatagtgatcaataggg |
32088244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 93 - 259
Target Start/End: Original strand, 41746472 - 41746642
Alignment:
| Q |
93 |
ctattcttcttatggtattacttctgttgggcaattatacttc-gtatttagctattcatggtagttagttaggaatttcattttatatcca---atgct |
188 |
Q |
| |
|
||||| || |||||||||||| |||||| || | || ||||| |||||||||||| |||| |||| ||||| ||||||| |||||||| ||||| |
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|
| T |
41746472 |
ctattattattatggtattacctctgtttggaagttgtactttagtatttagctatatgtggtggttacttaggtatttcataatatatccagttatgct |
41746571 |
T |
|
| Q |
189 |
tggtcttggttaagattactgtataattagttactccaattttgatttattattggcactatttggtggta |
259 |
Q |
| |
|
|||| | ||||||||||| ||||||||||||||||||||| ||||||||||| || |||| ||||||||| |
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|
| T |
41746572 |
tggtttaggttaagattattgtataattagttactccaatgttgatttattactgcaactacttggtggta |
41746642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 41746719 - 41746796
Alignment:
| Q |
318 |
atagaattacggtgttggatcaccatgtgccccatctcatggatttgaatttttgtttactgaaatgaaatggttaac |
395 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||| ||| | ||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
41746719 |
atagaattacagtgtcggatcaccatgtgctccatttcacgtatttgaacttttgtatactgaaatgaaatgtttaac |
41746796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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