View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-8 (Length: 726)
Name: NF4549-Insertion-8
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 6 - 726
Target Start/End: Original strand, 26099272 - 26099990
Alignment:
| Q |
6 |
caaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtg |
105 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099272 |
caaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatggaaggaggataacaatgaagaagggtgatgattgtgtg |
26099371 |
T |
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| Q |
106 |
agttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgactgaggctccgacacatttctgccagattttg |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099372 |
aggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtagcttcggaatcttgactgaggctccgacacatttctgccagattttg |
26099471 |
T |
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| Q |
206 |
gtggggatggtaaatatagattttgtggggaatgcttcggaatgtagctccccggtatcacttaaccgggcagaactctgagcacgatttgagatggtga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26099472 |
gtggggatggtaaatatagattttgtggggaatgcttcggaatgtagctccccggtatcacttaacagggcagaactctgagcacgatttgagatggtga |
26099571 |
T |
|
| Q |
306 |
ttagcatcatttgagtataaagtttctaaattcattgaacttaatttggtacggtaggactcgtaacaaagtaatcaagcaattctaagttattttggaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26099572 |
ttagcatcatttgagtataaagtttctaaattcattgaacctaatttggtatggtaggactcgtaacaaagtaatcaagcaattctaagttattttggta |
26099671 |
T |
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| Q |
406 |
aagcaaagcagattttattaactaccacatgccaaaggagaagacatgcttagatagtgatacaaaatcattacaaaatagcctatgtatacattttact |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099672 |
aagcaaagcagattttattaactaccacatgccaaaggagaagacatgcttagatagtgatacaaaatcattacaaaatagcctatgtatacattttact |
26099771 |
T |
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| Q |
506 |
gggctctaacacatgtacgcatgaattcatctatgtcttatactgatttcaagtgaatcaccatctctcctattctattctattctctcatataccttgg |
605 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
26099772 |
gggctattacacatgtacgcatgaattcatctatgtcttatactgatttcaagtgaatcaccgtctcttctattctattctattctctcatataccttgg |
26099871 |
T |
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| Q |
606 |
cagatcttttgcaactctcagtcactgccagtttggaagacctctggcagatctttcatacagcctctaacacggagctcctaaaattcatgttgaattc |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| |
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| T |
26099872 |
cagatcttttgcaactctcagtcactgccagtttggaagacctctggcagatctttcatacagcttgtaacacagagctcctaaaattcatgttaaattc |
26099971 |
T |
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| Q |
706 |
cttgacattccaatctgaaca |
726 |
Q |
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||||||||||||||||||| |
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| T |
26099972 |
--tgacattccaatctgaaca |
26099990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
| Q |
125 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
174 |
Q |
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|||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
25224863 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25224814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
| Q |
125 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
174 |
Q |
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|||||| |||||||||||||||||||||| || ||||||||||||||||| |
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| T |
25289019 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25288970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
| Q |
125 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
174 |
Q |
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|||||| |||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
25728385 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
25728434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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