View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549-Insertion-9 (Length: 652)
Name: NF4549-Insertion-9
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 108 - 621
Target Start/End: Complemental strand, 31256443 - 31255928
Alignment:
| Q |
108 |
attaatatacgctctagacggtggtttaaagcaaatatcaaaagtatccacgagcgcatagatgagatagtgtgaatttcttctaacttaatcaatggtt |
207 |
Q |
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| T |
31256443 |
attaatatacgttctagacggtggcttaaagcaaatatcaaaagtatccacgagcgcatagatgagatagtgtgaatttcttctaatttaaccaatggtc |
31256344 |
T |
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| Q |
208 |
tgagtttgcattagacatccaacaactttaaaactcaaaactcttagaaaaagtatgtcatccaattgaatcctacaaagcttgagagattagtctttca |
307 |
Q |
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| T |
31256343 |
tgagtctgcattagacatgcaacaactttaaaactcaaaactcttagaaaaagtatgtcatccaattgaatcctacaagacttgagagattagtctttca |
31256244 |
T |
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| Q |
308 |
catattagtctttcacggttatacgcgaaggatagcttatttacgccaacnnnnnnn-caaagagacagatgtagtgcaatactacaataaatagacacc |
406 |
Q |
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| T |
31256243 |
cagattagtctttcacagttgtacgcgaaggatagcttatttacgccaaaaaaaaaaacaaagagacagatgtagtgcaatactacaataaatagacacc |
31256144 |
T |
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| Q |
407 |
cgtaaaaaa-caataaatacacacattaatgttaaaaagttatctatgttattcaagtgctggatcttgtaggatacgaatacagaatttatagttatgc |
505 |
Q |
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| T |
31256143 |
cgtaaaaaaacaataaatacacacattaatgttaaaaagttatctatgttattcaagggctggatcttgtaggatacgaatacagaatttatagttatgc |
31256044 |
T |
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| Q |
506 |
atcccttcctactttcatgaggaatggtcttttcaaaaaagttggattaaaaaatagaggtgtggagtgtggaccaaacaagaaagaatggagatcaaat |
605 |
Q |
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| T |
31256043 |
atcccttcctactttcatggggaatggtcttttcaaaaaagttggattaaaaaatagaggtgtggagtgtggaccaaacaagaaagaatggagatcaaat |
31255944 |
T |
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| Q |
606 |
gtggctgcgatttcct |
621 |
Q |
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| T |
31255943 |
gtggctgcgatttcct |
31255928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 31256541 - 31256464
Alignment:
| Q |
34 |
catgttgtttggatgacttgtatttaggttaattaaaagttcaaaatgttatgctctttcaacaaaagatgttcatta |
111 |
Q |
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| T |
31256541 |
catgttgtttggatcacttgtatttgggttaattaaaagttcaaaatgctatgctttttcaacaaaagatgttcatta |
31256464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 652
Target Start/End: Complemental strand, 31255914 - 31255884
Alignment:
| Q |
622 |
aaataaaataatcaatactaacatgctatta |
652 |
Q |
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| T |
31255914 |
aaataaaataatcaatactaacatgctatta |
31255884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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