View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4549_low_1 (Length: 628)
Name: NF4549_low_1
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549_low_1 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 569; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 19 - 610
Target Start/End: Original strand, 51457091 - 51457687
Alignment:
| Q |
19 |
gttgtttctcccaacattttcaacaaatgctgcttcctacttctcattcaatatcttgtaatcttatccttttaaatttatctaaatttcttgctgtctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457091 |
gttgtttctcccaacattttcaacaaatgctgcttcctacttctcattcaatatcttgtaatcttatccttttaaatttatctaaatttcttgctgtctg |
51457190 |
T |
|
| Q |
119 |
gtgtccccatttgtttttgcat-----atccagattatttattgttgtcattgcatcctcttcattcaatttatctattggtatttttgcctgttattac |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457191 |
gtgtccccatttgtttttgcatcacatatccagattatttattgttgtcattgcatcctcttcattcaatttatctattggtatttttgcctgttattac |
51457290 |
T |
|
| Q |
214 |
gtatactcactgcatgttgatgtcaagttggacttattgttttttatgttttcttgttgaattttctttgtccagttgtactgcctaacagtctcgggtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457291 |
gtatactcactgcatgttgatgtcaagttggactcattgttttttatgttttcttgttgaattttctttgtccagttgtactgcctaacagtctcgggtg |
51457390 |
T |
|
| Q |
314 |
aattgtaactgctttatgttactgcctttacttgatattctgttgctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatattaa |
413 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457391 |
aattgtaactgctttatgtgactgcctttacttgatattctgttgctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatattaa |
51457490 |
T |
|
| Q |
414 |
tatccaccaattcttcactgggtacacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttattt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457491 |
tatccaccaattcttcactgggtacacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttattt |
51457590 |
T |
|
| Q |
514 |
caggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtga |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457591 |
caggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtga |
51457687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 362 - 584
Target Start/End: Original strand, 51482082 - 51482305
Alignment:
| Q |
362 |
gtaatttctgca-tttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgcagcgattggc |
460 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | |||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
51482082 |
gtaatttctgcaatttttatttgagttgttgaatgaatgcagggaaatattaatgtgcaccaattctttactgggtacacaaatggtcgcccagattggc |
51482181 |
T |
|
| Q |
461 |
ttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgcc |
560 |
Q |
| |
|
|||| |||||| |||| ||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
51482182 |
ttaattggcctcaggttttgaaattgaaagattggcctccttctaatttatttagggaaagtttgcctcgtcattgtgctgagttcatatcttccttgcc |
51482281 |
T |
|
| Q |
561 |
ttataaagaatacacaaatccttt |
584 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
51482282 |
gtataaagaatatacagatccttt |
51482305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 352 - 608
Target Start/End: Original strand, 51498773 - 51499030
Alignment:
| Q |
352 |
tctgttgctggtaatttctgca-tttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgc |
450 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||| |||||| |
|
|
| T |
51498773 |
tctgttgcctgtaatttctgcaatttttatctgagttgttgattgaatgcagggagatattaatgtgcaccaattctttactgggtacacaaaaggtcgc |
51498872 |
T |
|
| Q |
451 |
agcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatat |
550 |
Q |
| |
|
||||||||||| |||||| |||| ||||||||||||||||||||||||||| | |||||| | ||| ||| ||||||||| |||||||||||||| |
|
|
| T |
51498873 |
cctgattggcttaattggcctcaggttttgaaattgaaagattggcctccttctaacttatttgaagaaagtttgcctcgtcattgtgctgagttcatat |
51498972 |
T |
|
| Q |
551 |
cttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgt |
608 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||||||| | ||| ||| ||||||||||| |
|
|
| T |
51498973 |
cttccttgccgtataaagaatatacagatcctttcaaaggtgttcttaaccttgctgt |
51499030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 352 - 607
Target Start/End: Complemental strand, 30205395 - 30205139
Alignment:
| Q |
352 |
tctgttgctggtaatttctgca-tttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgc |
450 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||| |||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||| |||| | |
|
|
| T |
30205395 |
tctgttgccagtaatttctgcaatttttatctgaggtgttgattgaatgcagggagatattaatttgcacaaattctttactgggtacacaaagggtctc |
30205296 |
T |
|
| Q |
451 |
agcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatat |
550 |
Q |
| |
|
|| |||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||| ||||| ||| || |||||| |||||||||||||| |
|
|
| T |
30205295 |
ctggactggcttaattggcctaaggttttgaaactgaaagattggcctccttctaatttatttgaggaaagtttgccccgtcattgtgctgagttcatat |
30205196 |
T |
|
| Q |
551 |
cttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctg |
607 |
Q |
| |
|
|||||||||| | |||||||| ||| ||||||| | |||| ||| |||||||||| |
|
|
| T |
30205195 |
cttccttgccgttcaaagaatatacagatcctttcaatggtgttctaaaccttgctg |
30205139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 351 - 437
Target Start/End: Original strand, 51439980 - 51440068
Alignment:
| Q |
351 |
ttctgttgctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatatt--aatatccaccaattcttcactgggta |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |||| |||||||||||||| || |||||||| |
|
|
| T |
51439980 |
ttctgttgctggtaatttctgcatttttattggagttgttgattgaacgcagggaattattaaaatatccaccaattatttactgggta |
51440068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 51439670 - 51439787
Alignment:
| Q |
21 |
tgtttctcccaacattttcaacaaatgctgcttcctacttctcattcaatatcttgtaatcttatccttttaaatttatct----aaatttcttgctgtc |
116 |
Q |
| |
|
||||||||||||| ||||||| ||||||| || | ||||||||||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
51439670 |
tgtttctcccaaccttttcaagaaatgctactcctcacttctcattcaatatcctgtcatcttat-cttttaaatttatctcgcacaatttattgctgta |
51439768 |
T |
|
| Q |
117 |
tggtgtccccatttgtttt |
135 |
Q |
| |
|
||||||||| | ||||||| |
|
|
| T |
51439769 |
tggtgtccctacttgtttt |
51439787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 454 - 523
Target Start/End: Original strand, 51440071 - 51440140
Alignment:
| Q |
454 |
gattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttt |
523 |
Q |
| |
|
||| ||||||| |||||| |||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
51440071 |
gatcggcttaattggccttgcgtgttgaatttgaaagattggccttcttttgatttatgtcaggaacttt |
51440140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 349 - 610
Target Start/End: Original strand, 43161743 - 43162011
Alignment:
| Q |
349 |
tattctgttgctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtc |
448 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
43161743 |
tattctgtggctagtaatttctttatttttattttagttgttcattgaatgcagagagacattaatatccaccgattcttcactggttacacaaggggtc |
43161842 |
T |
|
| Q |
449 |
gcagc-------gattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctg |
541 |
Q |
| |
|
||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43161843 |
gcaactcgcaaggactggcttaattggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacgtttacctcgtcatcatgctg |
43161942 |
T |
|
| Q |
542 |
agttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtga |
610 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43161943 |
agttcataacttccttgccttataaagaatatacaaatccatttagtggttctctcaaccttgctgtga |
43162011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 376 - 610
Target Start/End: Original strand, 27397441 - 27397675
Alignment:
| Q |
376 |
tttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgcagcgattggcttaaatggcctgagg |
475 |
Q |
| |
|
|||||||||||| || || |||||| |||||||||| | ||||||||||| ||||||||||||||| ||| || ||| | | | |||||| | | |
|
|
| T |
27397441 |
tttatttgagtttttgatccgatgcagatagatattaatgtgcaccaattctttactgggtacacaaattgtcccaaggataaacatgattggcctcaag |
27397540 |
T |
|
| Q |
476 |
tgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacac |
575 |
Q |
| |
|
| ||||||||||||||||||||||||||| | ||||| | ||| |||||| |||||| ||| |||||||||||||||||||| | ||||||||| || |
|
|
| T |
27397541 |
tattgaaattgaaagattggcctccttctaaactatttgaagaaagtttaccgcgtcattgtgcggagttcatatcttccttgccatttaaagaatatac |
27397640 |
T |
|
| Q |
576 |
aaatccttttagtggttctctcaaccttgctgtga |
610 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||| |
|
|
| T |
27397641 |
aaatcctttcaaaggtgctctcaaccttgctgtga |
27397675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 43161562 - 43161689
Alignment:
| Q |
32 |
acattttcaacaaatgctgcttcctacttctcattcaatatcttgtaatcttatccttttaaatttatctaaatttcttgctgtctggtgtccccatttg |
131 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
43161562 |
acattttcaacaaatgcgacttcacacttctcattcaatatcttgtaatcttat-cttttaaattggtctaaattttttgatgttgggtgtcccaatttg |
43161660 |
T |
|
| Q |
132 |
tttttg-----catatccagattatttat |
155 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
43161661 |
tttttggattacatatccagattatttat |
43161689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 502
Target Start/End: Complemental strand, 20867918 - 20867770
Alignment:
| Q |
354 |
tgttgctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgcagc |
453 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||| ||| |||||||||||||||||| | | | ||||| |||||||| ||||||||||||| |
|
|
| T |
20867918 |
tgttgctgataatttctaaatttttatttgacttgttgattcaatgcagggagatattaaagtggatgatttctttactgggtatacaaatggtcgcaag |
20867819 |
T |
|
| Q |
454 |
gattggcttaaatggcctgaggtgttgaaattgaaagattggcctcctt |
502 |
Q |
| |
|
||| |||| | |||||| || | ||||||||||| ||| ||||||||| |
|
|
| T |
20867818 |
gataagcttgattggcctcagctattgaaattgaatgatcggcctcctt |
20867770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 476 - 610
Target Start/End: Complemental strand, 7058 - 6924
Alignment:
| Q |
476 |
tgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacac |
575 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||| || |||||| |||||| |||||| |||||||||||||| |
|
|
| T |
7058 |
tgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacac |
6959 |
T |
|
| Q |
576 |
aaatccttttagtggttctctcaaccttgctgtga |
610 |
Q |
| |
|
| ||||| | ||||||||| | |||||||| |||| |
|
|
| T |
6958 |
acatcctgtaagtggttctattaaccttgccgtga |
6924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 136574 - 136481
Alignment:
| Q |
358 |
gctggtaatttctgcatttttatttgagttgttcattgaatgcagggagatattaatatccaccaattcttcactgggtacacaaatggtcgca |
451 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||| ||| |||||||||| |||||||| | || | ||||| | ||||||||||||||||||| |
|
|
| T |
136574 |
gctgataatttctgaatttttattcgagttgttgattaaatgcagggaaatattaatgtgaacgatttctttagcgggtacacaaatggtcgca |
136481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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