View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549_low_2 (Length: 324)
Name: NF4549_low_2
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 47708066 - 47707769
Alignment:
| Q |
17 |
aatcacacattccaaaattgcatcagcaatctcaatactaacatctttcacctcagtcttaaattcactccattcattaattgaatccaagtaatccaaa |
116 |
Q |
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| T |
47708066 |
aatcacacattccaaaattgcatcagcaatctcaatactaacatctttcacctcggtcttaaattcactccattcattaattgaatccaagtaatccaaa |
47707967 |
T |
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| Q |
117 |
ttcagcaagttacttagatttctctcataatttccacctctttcgctccattcttttgtcctctcccataacatcttccccaacttttcggcacccatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47707966 |
ttcagcaagttacttagatttctctcataatttccacctctttcactccattcttttgtcctctcccataacatcttccccaacttttcggcacccatga |
47707867 |
T |
|
| Q |
217 |
attgcttacaatctttatctggaagactttttgcaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatc |
314 |
Q |
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|||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47707866 |
attgcttacaatctttttctggaagattttttgtaagttctctcacacaatcaaataacaacctctttgtcttgtgcaacacccttttagatttcatc |
47707769 |
T |
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