View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4549_low_4 (Length: 305)

Name: NF4549_low_4
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4549_low_4
NF4549_low_4
[»] chr4 (6 HSPs)
chr4 (64-235)||(32008435-32008606)
chr4 (20-63)||(32008593-32008636)
chr4 (247-301)||(54223571-54223625)
chr4 (69-122)||(32003536-32003588)
chr4 (255-299)||(9712940-9712984)
chr4 (247-287)||(36273057-36273097)
[»] chr6 (1 HSPs)
chr6 (247-301)||(369505-369559)
[»] chr3 (2 HSPs)
chr3 (234-296)||(36738266-36738328)
chr3 (247-296)||(22893990-22894039)
[»] chr5 (1 HSPs)
chr5 (247-296)||(42772056-42772105)
[»] chr7 (1 HSPs)
chr7 (256-301)||(6980943-6980988)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 64 - 235
Target Start/End: Complemental strand, 32008606 - 32008435
Alignment:
Q  64 ccagttcatatctttaattatttatttaatgtaacttctcaatttagcagtgacagtacggcacggagtcttaaaccaaattnnnnnnnntgaaacccaa 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||    
T  32008606 ccagttcatatctttaattatttatttaatgtaacttctcaatttagcagtgacagtacagcacggagtcttaaaccaaattaaaaaaaatgaaacccaa 32008507  T
Q  164 catagtacagcacgtcagcacggagtgttactaaacgattctaccaaacttttttaagttacttaaaattac 235  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32008506 cagagtacagcacgtcagcacggagtgttactaaacgattctaccaaacttttttaagttacataaaattac 32008435  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 32008636 - 32008593
Alignment:
Q  20 ataaactataaagagtagatgcttgccctaccagttcatatctt 63  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  32008636 ataaactataaagagtggatgcttgccctaccagttcatatctt 32008593  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 54223571 - 54223625
Alignment:
Q  247 ttgtggtcggtgacatagaccaaccacaatattacaagtgtctttcttctctctc 301  Q
    ||||||| |||||||| ||||||||||||| | |||| |||||||||||| ||||    
T  54223571 ttgtggttggtgacattgaccaaccacaatgtcacaaatgtctttcttctttctc 54223625  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 32003588 - 32003536
Alignment:
Q  69 tcatatctttaattatttatttaatgtaacttctcaatttagcagtgacagtac 122  Q
    |||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||    
T  32003588 tcatatctttaatt-tctatttaatgcaacttcttaatttggcagtgacagtac 32003536  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 9712984 - 9712940
Alignment:
Q  255 ggtgacatagaccaaccacaatattacaagtgtctttcttctctc 299  Q
    |||||||| ||||||||||||| | ||||||| ||||||||||||    
T  9712984 ggtgacattgaccaaccacaatgtcacaagtggctttcttctctc 9712940  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 36273097 - 36273057
Alignment:
Q  247 ttgtggtcggtgacatagaccaaccacaatattacaagtgt 287  Q
    ||||||||||||| || ||||||||||||||| ||||||||    
T  36273097 ttgtggtcggtgatattgaccaaccacaatatcacaagtgt 36273057  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 369559 - 369505
Alignment:
Q  247 ttgtggtcggtgacatagaccaaccacaatattacaagtgtctttcttctctctc 301  Q
    ||||||| |||||||| ||||||||||||| | ||||||||||||||||| ||||    
T  369559 ttgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttctttctc 369505  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 36738266 - 36738328
Alignment:
Q  234 acattacgtgatgttgtggtcggtgacatagaccaaccacaatattacaagtgtctttcttct 296  Q
    |||||| ||||||||||||| ||||| || |  |||||||||||| |||||||||||||||||    
T  36738266 acattaggtgatgttgtggttggtgatattggtcaaccacaatatcacaagtgtctttcttct 36738328  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 22894039 - 22893990
Alignment:
Q  247 ttgtggtcggtgacatagaccaaccacaatattacaagtgtctttcttct 296  Q
    ||||||| |||||||| ||||||||||||| | ||||||| |||||||||    
T  22894039 ttgtggttggtgacattgaccaaccacaatgtcacaagtgactttcttct 22893990  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 42772105 - 42772056
Alignment:
Q  247 ttgtggtcggtgacatagaccaaccacaatattacaagtgtctttcttct 296  Q
    ||||||| |||||||| ||||||||||||| | |||||||||||||||||    
T  42772105 ttgtggttggtgacattgaccaaccacaatgtcacaagtgtctttcttct 42772056  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 6980988 - 6980943
Alignment:
Q  256 gtgacatagaccaaccacaatattacaagtgtctttcttctctctc 301  Q
    ||||||| | ||||||||||| ||||||||| ||||||||||||||    
T  6980988 gtgacattggccaaccacaatgttacaagtggctttcttctctctc 6980943  T

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