View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4549_low_6 (Length: 288)

Name: NF4549_low_6
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4549_low_6
NF4549_low_6
[»] chr3 (25 HSPs)
chr3 (19-277)||(6280231-6280489)
chr3 (19-162)||(10839367-10839511)
chr3 (35-147)||(22845364-22845476)
chr3 (35-161)||(43347324-43347451)
chr3 (21-144)||(54546904-54547027)
chr3 (19-152)||(1781759-1781893)
chr3 (19-144)||(8926763-8926889)
chr3 (35-179)||(46685753-46685897)
chr3 (19-136)||(48206851-48206968)
chr3 (19-144)||(33103741-33103866)
chr3 (19-163)||(36539629-36539774)
chr3 (20-144)||(51336208-51336332)
chr3 (19-161)||(19649360-19649504)
chr3 (39-163)||(13856117-13856241)
chr3 (39-137)||(5391475-5391573)
chr3 (39-161)||(21853215-21853337)
chr3 (19-156)||(3178701-3178838)
chr3 (19-163)||(20382516-20382660)
chr3 (39-147)||(8950506-8950614)
chr3 (39-147)||(40845919-40846027)
chr3 (39-156)||(44994961-44995079)
chr3 (39-115)||(23467528-23467604)
chr3 (39-163)||(32352865-32352989)
chr3 (73-139)||(39352246-39352311)
chr3 (87-144)||(50663200-50663257)
[»] chr5 (26 HSPs)
chr5 (19-161)||(36769062-36769204)
chr5 (19-146)||(42119619-42119747)
chr5 (26-163)||(33271256-33271393)
chr5 (20-144)||(614397-614522)
chr5 (19-163)||(8456949-8457094)
chr5 (44-167)||(10115182-10115306)
chr5 (19-146)||(25560330-25560458)
chr5 (19-153)||(27916136-27916272)
chr5 (39-163)||(38397616-38397740)
chr5 (42-144)||(39862492-39862594)
chr5 (19-163)||(11856292-11856437)
chr5 (25-137)||(9737993-9738108)
chr5 (19-139)||(29491424-29491543)
chr5 (39-163)||(37169019-37169143)
chr5 (34-152)||(3341117-3341235)
chr5 (19-137)||(10081142-10081261)
chr5 (39-161)||(16618558-16618680)
chr5 (42-163)||(6257396-6257517)
chr5 (35-156)||(6174758-6174881)
chr5 (39-139)||(23218503-23218603)
chr5 (54-137)||(29790231-29790313)
chr5 (39-115)||(15631631-15631708)
chr5 (47-156)||(10052493-10052603)
chr5 (65-135)||(15475408-15475478)
chr5 (89-139)||(33188333-33188383)
chr5 (19-60)||(22903254-22903295)
[»] chr1 (27 HSPs)
chr1 (19-170)||(10907627-10907779)
chr1 (20-163)||(38859849-38859993)
chr1 (47-163)||(5558335-5558450)
chr1 (19-155)||(26835335-26835472)
chr1 (39-163)||(10156002-10156126)
chr1 (77-163)||(37189696-37189781)
chr1 (34-156)||(30745356-30745479)
chr1 (34-156)||(30766807-30766930)
chr1 (39-147)||(3346804-3346912)
chr1 (39-156)||(49902486-49902603)
chr1 (39-163)||(5975006-5975130)
chr1 (39-163)||(47022720-47022844)
chr1 (20-145)||(30252748-30252875)
chr1 (39-144)||(7742784-7742889)
chr1 (39-163)||(42517280-42517408)
chr1 (19-133)||(44107404-44107519)
chr1 (37-152)||(45968683-45968798)
chr1 (34-136)||(13131909-13132011)
chr1 (37-163)||(26511620-26511745)
chr1 (73-147)||(42456624-42456698)
chr1 (19-139)||(14796873-14796994)
chr1 (19-139)||(14805747-14805868)
chr1 (39-136)||(23908303-23908400)
chr1 (39-144)||(48392411-48392516)
chr1 (39-115)||(29149582-29149658)
chr1 (78-136)||(44462491-44462549)
chr1 (23-82)||(37189304-37189364)
[»] chr4 (24 HSPs)
chr4 (19-170)||(50328793-50328945)
chr4 (19-163)||(17888536-17888681)
chr4 (19-170)||(46473991-46474143)
chr4 (66-156)||(47084057-47084147)
chr4 (52-155)||(10094387-10094491)
chr4 (19-136)||(12792244-12792362)
chr4 (19-146)||(11054450-11054581)
chr4 (39-179)||(25954768-25954909)
chr4 (19-163)||(31377387-31377531)
chr4 (19-136)||(35322717-35322835)
chr4 (39-179)||(34241011-34241152)
chr4 (39-163)||(1535789-1535913)
chr4 (25-147)||(20818570-20818693)
chr4 (39-161)||(37801252-37801374)
chr4 (22-137)||(9742545-9742661)
chr4 (39-147)||(36012187-36012295)
chr4 (66-156)||(19124731-19124821)
chr4 (39-161)||(49284375-49284497)
chr4 (19-114)||(322584-322680)
chr4 (35-147)||(54090193-54090306)
chr4 (19-115)||(35018935-35019030)
chr4 (39-115)||(46583575-46583651)
chr4 (39-136)||(52632536-52632633)
chr4 (106-179)||(24992007-24992081)
[»] chr6 (12 HSPs)
chr6 (19-134)||(27863697-27863812)
chr6 (22-147)||(13103120-13103246)
chr6 (19-136)||(34103683-34103800)
chr6 (19-144)||(28750655-28750781)
chr6 (39-163)||(9231840-9231964)
chr6 (39-163)||(24694637-24694761)
chr6 (39-147)||(14309800-14309908)
chr6 (78-156)||(24497567-24497645)
chr6 (19-115)||(11279538-11279634)
chr6 (53-161)||(13627572-13627680)
chr6 (47-156)||(1727926-1728035)
chr6 (19-115)||(11212669-11212765)
[»] chr7 (18 HSPs)
chr7 (39-163)||(44164729-44164853)
chr7 (19-163)||(10334175-10334320)
chr7 (19-180)||(17303082-17303246)
chr7 (47-144)||(9770685-9770782)
chr7 (39-179)||(24320408-24320549)
chr7 (19-170)||(33057636-33057787)
chr7 (39-163)||(34707134-34707258)
chr7 (39-162)||(10576691-10576814)
chr7 (39-158)||(32876521-32876640)
chr7 (39-137)||(29555951-29556049)
chr7 (35-153)||(19334556-19334676)
chr7 (39-139)||(29981123-29981223)
chr7 (39-163)||(34259536-34259660)
chr7 (66-144)||(15017818-15017896)
chr7 (19-144)||(26284383-26284508)
chr7 (39-163)||(29238129-29238253)
chr7 (19-113)||(41853130-41853226)
chr7 (97-144)||(43342486-43342533)
[»] scaffold0086 (1 HSPs)
scaffold0086 (66-179)||(20800-20914)
[»] chr8 (17 HSPs)
chr8 (19-161)||(35806793-35806934)
chr8 (19-163)||(42072427-42072570)
chr8 (39-147)||(21525376-21525484)
chr8 (39-147)||(33934371-33934479)
chr8 (38-161)||(19334799-19334923)
chr8 (39-163)||(22324614-22324738)
chr8 (78-155)||(16591369-16591446)
chr8 (39-147)||(42013890-42013998)
chr8 (20-152)||(16818970-16819105)
chr8 (36-139)||(24065288-24065391)
chr8 (66-161)||(2271240-2271335)
chr8 (19-144)||(10112044-10112170)
chr8 (39-164)||(26021413-26021539)
chr8 (19-163)||(2824168-2824312)
chr8 (66-136)||(21488111-21488181)
chr8 (19-147)||(43282853-43282982)
chr8 (70-156)||(16523155-16523241)
[»] chr2 (18 HSPs)
chr2 (19-163)||(14942030-14942173)
chr2 (39-163)||(29846460-29846584)
chr2 (19-136)||(40780052-40780171)
chr2 (39-147)||(19181566-19181674)
chr2 (39-163)||(42769744-42769868)
chr2 (19-113)||(23685406-23685501)
chr2 (19-179)||(28321672-28321834)
chr2 (19-115)||(1387322-1387418)
chr2 (19-139)||(41674716-41674838)
chr2 (19-147)||(14539706-14539835)
chr2 (19-148)||(33009669-33009800)
chr2 (39-161)||(40277276-40277398)
chr2 (39-156)||(14186431-14186548)
chr2 (19-137)||(3956569-3956688)
chr2 (36-144)||(43139760-43139870)
chr2 (19-137)||(6318470-6318590)
chr2 (66-136)||(2888086-2888156)
chr2 (20-113)||(25665222-25665316)
[»] scaffold0045 (1 HSPs)
scaffold0045 (36-144)||(34457-34566)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 6280489 - 6280231
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280489 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 6280390  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccggccttagaactaccactgcatgtgattgcaattatataagagggccggt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280389 aaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccggccttagaactaccactgcatgtgattgcaattatataagagggccggt 6280290  T
Q  219 ttaataatttttaatagtaagtgaatcgtaaagcaagtttgaatatatacgaatttctt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6280289 ttaataatttttaatagtaagtgaatcgtaaagcaagtttgaatatatacgaatttctt 6280231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 10839511 - 10839367
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||| ||||   |||||||||| |||| |||||||||| |||||||| |||||| |||||| | ||||||||||||||||||||||||||||||     
T  10839511 gcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattcaga 10839412  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccggg 162  Q
    |||||||||||||||||||||| ||||||| || ||||| |||||    
T  10839411 gaaatttacataagaaattgcaaaaaatttgggtcggagcccggg 10839367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 22845476 - 22845364
Alignment:
Q  35 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 134  Q
    |||||| ||||||||| |||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  22845476 ggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggggtttatataagaaatttaggtgaatttacataagaaa 22845377  T
Q  135 ttgcacaaaattt 147  Q
    ||||| |||||||    
T  22845376 ttgcaaaaaattt 22845364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 43347451 - 43347324
Alignment:
Q  35 ggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 133  Q
    ||||||||||| |||| |||||||||| |||||||| |||||| |||||| | ||||| ||| |||||||||||||||||||| | ||||||||||||||    
T  43347451 ggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttacataagaa 43347352  T
Q  134 attgcacaaaatttaggccggagtccgg 161  Q
    |||||| ||||||| || ||||| ||||    
T  43347351 attgcaaaaaatttgggtcggagcccgg 43347324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 54546904 - 54547027
Alignment:
Q  21 aacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 120  Q
    ||||||||||||  | ||||||||| |||| | |||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||||  | |    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcaaagga 54547003  T
Q  121 atttacataagaaattgcacaaaa 144  Q
    |||||| |||||||||||| ||||    
T  54547004 atttacgtaagaaattgcaaaaaa 54547027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 1781759 - 1781893
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||  |||| |||||||||| ||||||| ||||||| |||||| | ||||||| | ||||||||||||||||||||     
T  1781759 gcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattcaga 1781858  T
Q  118 gaaatttacataagaaattgcacaaaatttaggcc 152  Q
    |  ||||||||||||||||||| ||||||| ||||    
T  1781859 gggatttacataagaaattgcaaaaaatttgggcc 1781893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 8926763 - 8926889
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||| |||| |||||| |||| |||||||||| |||||||| |||| | |||||| ||||||||||| ||||||||| ||||||||||     
T  8926763 gcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcaga 8926862  T
Q  118 gaaatttacataagaaattgcacaaaa 144  Q
    | |||||||||| ||||||||| ||||    
T  8926863 ggaatttacatatgaaattgcaaaaaa 8926889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 46685897 - 46685753
Alignment:
Q  35 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 134  Q
    ||||| ||||| |||| |||| ||||| || |||||| |||| ||||||||||||||||||  |||||||||||||||| ||||  ||||||||||||||    
T  46685897 ggtttgcataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttacataagaaa 46685798  T
Q  135 ttgcacaaaatttaggccggagtccgggctcgccgg-ccttagaac 179  Q
     |||| ||||||| |||||| ||||||||| ||||| |||||||||    
T  46685797 -tgcaaaaaatttgggccggcgtccgggcttgccggaccttagaac 46685753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 48206851 - 48206968
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||||||||||||  |||||||||| |||| ||||| |||| ||||||| ||||||| |||||||||||||||||| |||||||||||| |||||||     
T  48206851 gcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattcaga 48206949  T
Q  118 gaaatttacataagaaatt 136  Q
    | ||||||||||| |||||    
T  48206950 ggaatttacataaaaaatt 48206968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 33103741 - 33103866
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||| | ||||||||| ||||  ||||||||| || |||||| |||||||||| || ||||||||| |  |||||||||||||| | ||    
T  33103741 gcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatataagaaatttaagg 33103840  T
Q  119 aaatttacataagaaattgcacaaaa 144  Q
     |||||||||||||||||||| ||||    
T  33103841 gaatttacataagaaattgcaaaaaa 33103866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 36539629 - 36539774
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||  |||| |||| ||||| |||||||| | |||| |||||| | ||||||||| || |||||||||||||| |      
T  36539629 gcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaatttata 36539728  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |  ||||||||||||||||||| |||||||||||||||| ||||||    
T  36539729 gggatttacataagaaattgcataaaatttaggccggagcccgggc 36539774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 51336208 - 51336332
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggga 119  Q
    ||||||||||||| | |||||| ||| |||| ||||| |||| || |||||| |||| ||||||||||||||||| || ||||||||| |||||||||      
T  51336208 caacacatttatagaagtttacgtaagaaattgcaagtaaataataaaaaatttaaagaaattgtcaaatttataaagatttatataaaaaattcaggag 51336307  T
Q  120 aatttacataagaaattgcacaaaa 144  Q
    ||||||||||| |||||||| ||||    
T  51336308 aatttacataaaaaattgcaaaaaa 51336332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 19649504 - 19649360
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc--aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||||||||||  |  |||||||| |||| |||||||||| |||  ||||||||||| |||||||| ||||||||  |||||||||||||||||||     
T  19649504 gcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcat 19649405  T
Q  117 ggaaatttacataagaaattgcacaaaatttaggccggagtccgg 161  Q
     |  |||||||||||||||| || |||| ||  ||||||| ||||    
T  19649404 agcgatttacataagaaattacaaaaaagttgtgccggagcccgg 19649360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 13856117 - 13856241
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| | |||||||||||||||||  |  ||||||| |||||||||     
T  13856117 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatataagaaattcatagggatttacacaagaaattga 13856216  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  13856217 aaaaaatttggcccggagcccgggc 13856241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 5391475 - 5391573
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattg 137  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |  ||||||| |||||||||    
T  5391475 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 5391573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 21853215 - 21853337
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||  |  ||||||| ||||||||||    
T  21853215 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatataagaaattcatagggatttacacaagaaattgc 21853314  T
Q  139 acaaaatttaggccggagtccgg 161  Q
    | ||||||| | |||||| ||||    
T  21853315 aaaaaatttggcccggagcccgg 21853337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 3178701 - 3178838
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||| |||||||   |||||||||  |||| |||||||||| |  ||||| ||||| |||||| | ||||||||||| |||||||||||||||||  |    
T  3178701 gcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatataagaaattcatag 3178800  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggag 156  Q
      ||||||| ||||||||| | ||||||| ||||||||    
T  3178801 ggatttacacaagaaattgaaaaaaatttgggccggag 3178838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 20382516 - 20382660
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||| ||||||||   |||||||||| |||| |||||||||| || |||| ||||||| |||||  | ||||||||| |||||||||||||||||||      
T  20382516 gcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatataagaaattcata 20382615  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |  ||||||||||||||||  | ||||||| |||||||| ||||||    
T  20382616 gggatttacataagaaatt-aaaaaaatttgggccggagcccgggc 20382660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 8950614 - 8950506
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| ||||  ||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||  | |||||||| ||||||||||    
T  8950614 tacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcataggaatttacacaagaaattgc 8950515  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  8950514 aaaaaattt 8950506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 40846027 - 40845919
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  40846027 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 40845928  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  40845927 aaaaaattt 40845919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 44995079 - 44994961
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttata-gaggtttatataagaaattcagggaaatttacataagaaattg 137  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||| | |||||||||||||||||||  |  ||||||| |||||||||    
T  44995079 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatataagaaattcatagggatttacacaagaaattg 44994980  T
Q  138 cacaaaatttaggccggag 156  Q
    || ||||||| | ||||||    
T  44994979 caaaaaatttggcccggag 44994961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 23467604 - 23467528
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  23467604 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattca 23467528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 32352865 - 32352989
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| | |||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||| | ||||||||||    
T  32352865 tacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttatacaagaaattgc 32352964  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | |||| || | |||||| ||||||    
T  32352965 aaaaaaattggcccggagcccgggc 32352989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 39352246 - 39352311
Alignment:
Q  73 taaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgca 139  Q
    |||| ||||||| |||||||||||| ||||||||||||||| || |||||||| |||||||||||||    
T  39352246 taaagaaattgttaaatttatagagatttatataagaaatttagagaaattta-ataagaaattgca 39352311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 50663200 - 50663257
Alignment:
Q  87 aatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 144  Q
    ||||||||  ||||||||||||||||| || | ||| |||||||||||||||| ||||    
T  50663200 aatttataagggtttatataagaaatttagaggaatctacataagaaattgcaaaaaa 50663257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 36769204 - 36769062
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||  ||||||||||  |||| |||||||||| |||||||||||||| |||||| | |||| ||||||||||||||||||||||||| |    
T  36769204 gcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcagag 36769105  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgg 161  Q
     |||||||||||||||||||| ||||||| |||||||||||||    
T  36769104 gaatttacataagaaattgcaaaaaatttgggccggagtccgg 36769062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 42119619 - 42119747
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||| ||||  ||| ||||| || |||| ||||||| |||||||| ||||||||||||||||||||||||||||||     
T  42119619 gcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattcaga 42119718  T
Q  118 gaaatttacataagaaattgcacaaaatt 146  Q
    | ||||||||||||||||| || ||||||    
T  42119719 ggaatttacataagaaattacaaaaaatt 42119747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 33271393 - 33271256
Alignment:
Q  26 atttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaattta 125  Q
    |||||||  |||||| |||| ||||  ||| ||||| || |||||| |||| |||||||| |||||||||||||||||||||||||||||  | ||||||    
T  33271393 atttataggggtttatataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatagaggtttatataagaaattcaacggaattta 33271294  T
Q  126 cataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |||||||||||| | |||| || |||||||||||||||    
T  33271293 cataagaaattgtaaaaaaattgggccggagtccgggc 33271256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 614522 - 614397
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||||||||||   |||||||||| |||| |||||||||| || ||||| |||||| |||||| ||||||||||| | ||||||||| |||||||| |    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattcagag 614423  T
Q  119 aaatttacataagaaattgcacaaaa 144  Q
     |||||||||||||||||||| ||||    
T  614422 gaatttacataagaaattgcaaaaaa 614397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 8457094 - 8456949
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||| |||||||  ||||||||||| |||| |||||||||| || ||||| |||||| |||||| | ||||||||| || ||||||||||||||||      
T  8457094 gcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcata 8456995  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |  ||||||||||||||||| | ||||||| |||||||| ||||||    
T  8456994 gggatttacataagaaattgaaaaaaatttgggccggagcccgggc 8456949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 10115182 - 10115306
Alignment:
Q  44 aaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaa 142  Q
    ||||||| |||||||||| || |||| ||||||| |||||||| ||||||| | |||||||||||||||| ||| | ||||||||||| |||||||| ||    
T  10115182 aaaaaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacataaaaaattgcaaaa 10115281  T
Q  143 aatttaggccggagtccgggctcgc 167  Q
    || || |||||||| ||||| ||||    
T  10115282 aaattgggccggagcccgggatcgc 10115306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 25560458 - 25560330
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaa-aatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||| |||| |||||||||| || ||| |||||||| |||||||| |||||||||| |||||||||||||||| |      
T  25560458 gcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaatttata 25560359  T
Q  118 gaaatttacataagaaattgcacaaaatt 146  Q
       ||||||||||||||||| | ||||||    
T  25560358 aggatttacataagaaattgaaaaaaatt 25560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 27916136 - 27916272
Alignment:
Q  19 gcaacacatttataa-aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||||||||||  ||||||| |||| |||| |||| ||||| || ||||| |||||  ||||||   |||||||||  |||||||||||||||||||    
T  27916136 gcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattcag 27916235  T
Q  117 ggaaatttacataagaaattgcacaaaatttaggccg 153  Q
     | |||||||||||||||||||| |||||||||||||    
T  27916236 aggaatttacataagaaattgcaaaaaatttaggccg 27916272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 38397616 - 38397740
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  38397616 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 38397715  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  38397716 aaaaaatttggcccggagcccgggc 38397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 39862594 - 39862492
Alignment:
Q  42 ataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcaca 141  Q
    |||| |||| |||||||||| || ||||||||||| |||||| | ||||||||| |||||||||||||||||||  | |||||||| ||||||||||| |    
T  39862594 ataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgcaaa 39862495  T
Q  142 aaa 144  Q
    |||    
T  39862494 aaa 39862492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 11856292 - 11856437
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||| |||||||   |||||||||| |||| ||||| |||| ||||||| ||||||| |||||| | ||||||||| | ||||||||||||||||||     
T  11856292 gcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattcaga 11856391  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |  |||||||||||||||| || |||| || ||||| || ||||||    
T  11856392 gcgatttacataagaaattacagaaaacttgggccgaagcccgggc 11856437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 9738108 - 9737993
Alignment:
Q  25 catttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc--agggaaa 121  Q
    ||||||||  ||||||||||| |||| |||||||||| | |||||| |||||| |||||||| ||||||||| | ||||||||||||||||  |||||      
T  9738108 catttataggggtttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatt 9738009  T
Q  122 tttacataagaaattg 137  Q
    ||||||||||||||||    
T  9738008 tttacataagaaattg 9737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 29491543 - 29491424
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||   |||| ||||| |||| |||||||||| ||||||||  | ||  ||||||| ||||||||| |||| ||||||||||||||  |    
T  29491543 gcaacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaaagaattgtccaatttataggggtt-atataagaaattcatag 29491445  T
Q  119 aaatttacataagaaattgca 139  Q
    |||||||||||||||||||||    
T  29491444 aaatttacataagaaattgca 29491424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 37169143 - 37169019
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  37169143 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 37169044  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  37169043 aaaaaatttggcccggagcccgggc 37169019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 3341235 - 3341117
Alignment:
Q  34 aggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatat-aagaaattcagggaaatttacataaga 132  Q
    ||||||||||||||||| | |||||||| |||||||| ||||| |||||  | ||||||||| || |||||| || |||||||| | |||||||||||||    
T  3341235 aggtttacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattcagag-aatttacataaga 3341137  T
Q  133 aattgcacaaaatttaggcc 152  Q
    ||||||| ||||||| ||||    
T  3341136 aattgcaaaaaatttgggcc 3341117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 10081142 - 10081261
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||   |||||||||| |||| | |||||||| || |||| ||||||| |||||| | ||||||||| |||||||||||||||||||      
T  10081142 gcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatataagaaattcata 10081241  T
Q  118 gaaatttacataagaaattg 137  Q
    |  |||||||||||||||||    
T  10081242 gggatttacataagaaattg 10081261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 16618680 - 16618558
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||  ||||||||||||||||||  |  ||||||| |||||||||     
T  16618680 tacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatataagaaattcatagggatttacacaagaaattgt 16618581  T
Q  139 acaaaatttaggccggagtccgg 161  Q
    | ||||||| | |||||| ||||    
T  16618580 aaaaaatttggcccggagcccgg 16618558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 163
Target Start/End: Complemental strand, 6257517 - 6257396
Alignment:
Q  42 ataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcaca 141  Q
    |||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||| |||||||||||||  |  ||||||| ||||||||||| |    
T  6257517 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtataagaaattcatagggatttacacaagaaattgcaaa 6257418  T
Q  142 aaatttaggccggagtccgggc 163  Q
    |||||| | |||||| ||||||    
T  6257417 aaatttggcccggagcccgggc 6257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 6174758 - 6174881
Alignment:
Q  35 ggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagagg--tttatataagaaattcagggaaatttacataaga 132  Q
    ||||||||||  |||| |||||||||| || |||||| |||| |||||||| ||||||||| ||  ||||||||||||||||||   ||||||| |||||    
T  6174758 ggtttacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggggggtttatataagaaattcagaagaatttacgtaaga 6174857  T
Q  133 aattgcacaaaatttaggccggag 156  Q
    |||| || ||||||| ||| ||||    
T  6174858 aattacaaaaaatttgggctggag 6174881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 23218503 - 23218603
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  23218503 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 23218602  T
Q  139 a 139  Q
    |    
T  23218603 a 23218603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 29790313 - 29790231
Alignment:
Q  54 aagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattg 137  Q
    |||||||| |||||||| ||||| |||||| | |||||||| ||||||||||||||||||||    ||||||||||||||||||    
T  29790313 aagcaaataatcaaaaa-ctaaagaaattgcccaatttataaaggtttatataagaaattcataagaatttacataagaaattg 29790231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 15631631 - 15631708
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagagg-tttatataagaaattca 115  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| || |||||||||||||||||    
T  15631631 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatataagaaattca 15631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 10052603 - 10052493
Alignment:
Q  47 aaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaat 145  Q
    |||| |||||||||| ||| ||||| | ||| |||||  | |||||||||| ||||||||||| | ||||| |  ||||||||||||||||| | ||||     
T  10052603 aaattgcaagcaaataatctaaaattttaaagaaattacctaatttatagacgtttatataagtagttcagagggatttacataagaaattgtaaaaaaa 10052504  T
Q  146 ttaggccggag 156  Q
    || ||||||||    
T  10052503 ttgggccggag 10052493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 15475478 - 15475408
Alignment:
Q  65 caaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaat 135  Q
    ||||||| |||| ||||| |  |||||||| || ||||||||| ||||| || ||||||||||||||||||    
T  15475478 caaaaatttaaagaaatttttcaatttatatagatttatataaaaaattaagagaaatttacataagaaat 15475408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 33188383 - 33188333
Alignment:
Q  89 tttatagaggtttatataagaaattcagggaaatttacataagaaattgca 139  Q
    ||||||| ||||||||||||||||| ||   ||||||||||||||||||||    
T  33188383 tttataggggtttatataagaaatttagatgaatttacataagaaattgca 33188333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 22903254 - 22903295
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaa 60  Q
    |||||||||||||| |||||||||||| |||| |||||||||    
T  22903254 gcaacacatttatagaggtttacataagaaattgcaagcaaa 22903295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 10907779 - 10907627
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||   || ||||||| |||| |||||||||| |||||||| |||||| ||||||||  |||||||| ||||||||||||||||||||     
T  10907779 gcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattcaga 10907680  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 170  Q
    | |||||||||||||||||||| ||||||| |||||||| ||||| |||||||    
T  10907679 ggaatttacataagaaattgcaaaaaatttgggccggagcccggggtcgccgg 10907627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 38859849 - 38859993
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||||||||||  ||||||||||| |||| |||||||||| || |||| ||||||| |||||| | ||||||||| |||||||||||||||||||  |    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
     |||||||||||||||||| | ||||||| |||||||| ||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcccgggc 38859993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 163
Target Start/End: Original strand, 5558335 - 5558450
Alignment:
Q  47 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatt 146  Q
    |||| |||||||||| |||||||||||||| |||||||| ||||||||| |||||||||||||||||| || |  |||||||||||||||||| |||| |    
T  5558335 aaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggggtttatataagaaattc-ggaaggtttacataagaaattgcaaaaaaat 5558433  T
Q  147 taggccggagtccgggc 163  Q
    ||||||| || ||||||    
T  5558434 taggccgaagaccgggc 5558450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 26835335 - 26835472
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||| | |||| |||||||||| ||||||| ||||||| |||||||  |||||||||  ||||||||||||||||||      
T  26835335 gcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattcata 26835434  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccgga 155  Q
      ||||||||||| |||||||| |||| ||||||||||    
T  26835435 tgaatttacataataaattgcaaaaaaattaggccgga 26835472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 10156126 - 10156002
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| ||||||||||||||||||  | |||||||| ||||||||||    
T  10156126 tacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcataggaatttacacaagaaattgc 10156027  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | |||| || | |||||| ||||||    
T  10156026 aaaaaaattggcccggagcccgggc 10156002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 37189696 - 37189781
Alignment:
Q  77 taaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    ||||||||| ||||||||||| |||||||||||||||||  || ||||||||||||||||||| ||||||| |||||||||||||||    
T  37189696 taaattgtccaatttatagagatttatataagaaattcatagagatttacataagaaattgca-aaaatttgggccggagtccgggc 37189781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 30745356 - 30745479
Alignment:
Q  34 aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 132  Q
    |||||||||||| |||| ||||| |||| |||||||| | |||| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||| |    
T  30745356 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaa 30745455  T
Q  133 aattgcacaaaatttaggccggag 156  Q
    ||||||| || |||| || |||||    
T  30745456 aattgcaaaatatttgggtcggag 30745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 156
Target Start/End: Original strand, 30766807 - 30766930
Alignment:
Q  34 aggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 132  Q
    |||||||||||| |||| ||||| |||| |||||||| | |||| |||||||| ||||||||| | |||||| ||||||||||| ||||||||||||| |    
T  30766807 aggtttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacataaaa 30766906  T
Q  133 aattgcacaaaatttaggccggag 156  Q
    ||||||| || |||| || |||||    
T  30766907 aattgcaaaatatttgggtcggag 30766930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 3346804 - 3346912
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  3346804 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaacaaattgc 3346903  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  3346904 aaaaaattt 3346912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 49902486 - 49902603
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| |  |||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  49902486 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatataagaaattcatagggatttacacaagaaattgc 49902585  T
Q  139 acaaaatttaggccggag 156  Q
    | ||||||| | ||||||    
T  49902586 aaaaaatttggcccggag 49902603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 5975006 - 5975130
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||||||||||||||||   |  ||||||| |||||||||     
T  5975006 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattcttagggatttacacaagaaattga 5975105  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  5975106 aaaaaatttggcccggagcccgggc 5975130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 47022720 - 47022844
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| ||||  |||| |||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  || ||||||| ||||||||||    
T  47022720 tacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatataagaaattcatagagatttacacaagaaattgc 47022819  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  47022820 aaaaaatttggcccggagcccgggc 47022844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 30252875 - 30252748
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatat-aagaaattcagg 117  Q
    ||||| |||||||  ||||||||||| |||| |||||||||| ||| ||||||||||| || ||||| ||||||||| | ||||||| || ||||||||     
T  30252875 caacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataaaaaaattcaga 30252776  T
Q  118 gaaatttacataagaaattgcacaaaat 145  Q
     ||||||| |||| |||||||| |||||    
T  30252775 aaaatttatataaaaaattgcaaaaaat 30252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 7742889 - 7742784
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||     ||||||| ||||||||||    
T  7742889 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataaggatttacacaagaaattgc 7742790  T
Q  139 acaaaa 144  Q
    | ||||    
T  7742789 aaaaaa 7742784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 42517408 - 42517280
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggttt----atataagaaattcagggaaatttacataagaaa 134  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||    ||||||||||||||  |  ||||||| ||||||    
T  42517408 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatataagaaattcatagggatttacacaagaaa 42517309  T
Q  135 ttgcacaaaatttaggccggagtccgggc 163  Q
    ||||| ||||||| | |||||| ||||||    
T  42517308 ttgcaaaaaatttggcccggagcccgggc 42517280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 44107519 - 44107404
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||| | ||||||||| |||| ||||| |||| ||| |||||||| || |||||    ||||||||| ||||||||||| ||| ||||     
T  44107519 gcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatcaga 44107420  T
Q  118 gaaatttacataagaa 133  Q
    | ||||||||||||||    
T  44107419 ggaatttacataagaa 44107404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 45968683 - 45968798
Alignment:
Q  37 tttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||||||| |||| ||||| |||| |||||||||||| | |||||||| ||||||||   | |||||||| |||||||||  || |||||||| | |||    
T  45968683 tttacataagaaattgcaagtaaataatcaaaaatctataaaaattgtccaatttataagagattatataaaaaattcaggagaacttacataaaatatt 45968782  T
Q  137 gcacaaaatttaggcc 152  Q
    ||| ||||||| ||||    
T  45968783 gcaaaaaatttgggcc 45968798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 136
Target Start/End: Original strand, 13131909 - 13132011
Alignment:
Q  34 aggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 133  Q
    |||||||||||| |||| ||||| | || |  ||||| ||||| |||||||| ||||||||| | ||||||||| ||||| || | ||||||||||||||    
T  13131909 aggtttacataagaaattgcaaggagataagtaaaaagctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacataagaa 13132008  T
Q  134 att 136  Q
    |||    
T  13132009 att 13132011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 26511745 - 26511620
Alignment:
Q  37 tttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||| ||| |||| | ||| |||| ||||||||| |||| ||||| |  |||||| ||   ||||||||||||||||||||   |||||||||||||||    
T  26511745 tttacgtaagaaattgtaagtaaataatcaaaaatttaaagaaattattcaatttacaggaatttatataagaaattcaggggg-tttacataagaaatt 26511647  T
Q  137 gcacaaaatttaggccggagtccgggc 163  Q
    ||| |||| ||||||||||| ||||||    
T  26511646 gcaaaaaaattaggccggagcccgggc 26511620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 42456624 - 42456698
Alignment:
Q  73 taaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaattt 147  Q
    |||| |||||| | ||||||||| |||||||||||||||||||  | |||||||||||||||| ||| |||||||    
T  42456624 taaagaaattgcccaatttataggggtttatataagaaattcataggaatttacataagaaatagcaaaaaattt 42456698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 14796873 - 14796994
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||| |||||||||  ||||||||||| |||| ||||||||||  || |||||||||||  ||| | | ||||||||   || ||||||||||||||||     
T  14796873 gcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcaga 14796972  T
Q  118 gaaatttacataagaaattgca 139  Q
    | ||||||||||| ||||||||    
T  14796973 ggaatttacataaaaaattgca 14796994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 14805747 - 14805868
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||| |||||||||  ||||||||||| |||| ||||||||||  || |||||||||||  ||| | | ||||||||   || ||||||||||||||||     
T  14805747 gcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatctaaagtaatggcctaatttataagtgtgtatataagaaattcaga 14805846  T
Q  118 gaaatttacataagaaattgca 139  Q
    | ||||||||||| ||||||||    
T  14805847 ggaatttacataaaaaattgca 14805868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 23908303 - 23908400
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||||| |||| |||||||||| || |||||  |||| |||||||| ||||||||| | |||||||||||||||||  | |||||||| || |||||    
T  23908303 tacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatataagaaattcataggaatttacacaaaaaatt 23908400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 48392516 - 48392411
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||  |||||| | ||||||||| | |||||||||||||||||  |  ||||||| ||||||||||    
T  48392516 tacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgc 48392417  T
Q  139 acaaaa 144  Q
    | ||||    
T  48392416 aaaaaa 48392411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 29149658 - 29149582
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||| |||| |||||||||| || |||||  |||| |||||| | ||||||||| |||||||||||||||||||    
T  29149658 tacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatataagaaattca 29149582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 44462549 - 44462491
Alignment:
Q  78 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    |||||||| ||||||||||||||| ||||||||||||||  | |||||||||| |||||    
T  44462549 aaattgtctaatttatagaggtttgtataagaaattcagatagatttacataaaaaatt 44462491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 37189304 - 37189364
Alignment:
Q  23 cacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaatt 82  Q
    |||||||||| |||||||||||| |||| |||| ||||| ||| |||||| ||||||||||    
T  37189304 cacatttatagaggtttacataagaaattgcaaacaaataatcaaaaaatttaaataaatt 37189364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 50328793 - 50328945
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||| |||||||||||||||| |||||  ||| || ||||| | |||| |||||||| ||||||||||||||||||||||||||| ||     
T  50328793 gcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaaga 50328892  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 170  Q
    | |||||||| ||||||||||| |||| ||  ||| ||| |||||||||||||    
T  50328893 ggaatttacaaaagaaattgcaaaaaaattgagccagagcccgggctcgccgg 50328945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 17888681 - 17888536
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||| |||| |||||||||| || ||||| |||||| |||||| | ||||||||| || ||||||||||||||||      
T  17888681 gcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaattcata 17888582  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    | |||||||||||||||||| | ||||||| |||||||| ||||||    
T  17888581 ggaatttacataagaaattgaaaaaaatttgggccggagcccgggc 17888536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 46473991 - 46474143
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattat-caaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||| | ||||||||| ||||  ||||||||| || |||||||||||| |||||||  ||||||||  ||||||||||| |||||||      
T  46473991 gcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatataaaaaattcaca 46474090  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 170  Q
    | |||||||||||||||||||| ||||||| ||||||||  ||||| ||||||    
T  46474091 ggaatttacataagaaattgcaaaaaatttgggccggagctcgggcacgccgg 46474143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 47084057 - 47084147
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 156  Q
    ||||||||||| |||||  | ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  47084057 aaaaatctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattgcaaaaaatttaggccggag 47084147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 10094491 - 10094387
Alignment:
Q  52 gcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttagg 150  Q
    |||||||||| |||||||| ||||||||||||  | ||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||||| ||    
T  10094491 gcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcagagaaatttacataagaaattacaaaaaatttggg 10094392  T
Q  151 ccgga 155  Q
    |||||    
T  10094391 ccgga 10094387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 12792362 - 12792244
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc-aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||||||||||| | ||||| |||| ||||  ||||||||| ||| |||||||||||  ||||| | ||||||||| ||||||||||||||||||||     
T  12792362 gcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattcaga 12792263  T
Q  118 gaaatttacataagaaatt 136  Q
    |||||||||||||||||||    
T  12792262 gaaatttacataagaaatt 12792244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 11054450 - 11054581
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaat---tatcaaaaat-ctaaataaattgtcaaatttatagaggtttatataagaaattc 114  Q
    ||||||||||||||||||||||||||| |||| ||||||||||   ||  |||||| ||||| | |||| | ||||||||||||||||||||||||||||    
T  11054450 gcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaattc 11054549  T
Q  115 agggaaatttacataagaaattgcacaaaatt 146  Q
    |  |  ||||||||||||||||||| ||||||    
T  11054550 atagggatttacataagaaattgcaaaaaatt 11054581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 25954768 - 25954909
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  | |||||||| ||||||||||    
T  25954768 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcataggaatttacacaagaaattgc 25954867  T
Q  139 acaaaatttaggccggagtccgggctcgcc-ggccttagaac 179  Q
    | ||||||| | |||||| ||||| ||||| |||||||||||    
T  25954868 aaaaaatttggcccggagcccggggtcgccgggccttagaac 25954909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 31377387 - 31377531
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||  | |||| ||||||| |||||| | |||||||||||| ||||||||||||||||      
T  31377387 gcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatataagaaattcata 31377486  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    |  ||||||||||||||||| | ||||||| |||||||| ||||||    
T  31377487 gggatttacataagaaattg-aaaaaatttgggccggagcccgggc 31377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 35322835 - 35322717
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||| ||||||  |||||| |||| |||| |||||||||| |||||||| |||||| |||||||  ||||||||||||||||||||||| ||||||     
T  35322835 gcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattcaga 35322736  T
Q  118 gaaatttacataagaaatt 136  Q
    |||||||| |||| |||||    
T  35322735 gaaatttatataaaaaatt 35322717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 34241011 - 34241152
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  || |||| ||||||||||    
T  34241011 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatctacacaagaaattgc 34241110  T
Q  139 acaaaatttaggccggagtccgggctcgcc-ggccttagaac 179  Q
    | ||||||| | |||||| ||||| ||||| |||||||||||    
T  34241111 aaaaaatttggcccggagcccggggtcgccgggccttagaac 34241152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 1535789 - 1535913
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  1535789 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 1535888  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  1535889 aaaaaatttggcccggagcccgggc 1535913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 20818570 - 20818693
Alignment:
Q  25 catttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatt 123  Q
    |||||||| |||||||||||| |||| |||| ||||| ||||||| ||||||| |||||| | |||||||||  ||||||||||||||||||  |  |||    
T  20818570 catttatagaggtttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatt 20818669  T
Q  124 tacataagaaattgcacaaaattt 147  Q
    |||| ||||||||||| |||||||    
T  20818670 tacaaaagaaattgcaaaaaattt 20818693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 37801374 - 37801252
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| || ||| | ||||||||| | ||||||||| |||||||  |||||||||| ||||||||||    
T  37801374 tacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatataaaaaattcatagaaatttacacaagaaattgc 37801275  T
Q  139 acaaaatttaggccggagtccgg 161  Q
    | ||||||||| |||||| ||||    
T  37801274 aaaaaatttagcccggagcccgg 37801252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 9742661 - 9742545
Alignment:
Q  22 acacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 120  Q
    |||||||||||   |||||||||| |||| ||| | |||| |||||||| |||||| |||||| | ||||||||| |||| ||||||||||||||| | |    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  121 atttacataagaaattg 137  Q
    |||||||||||||||||    
T  9742561 atttacataagaaattg 9742545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 36012295 - 36012187
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    |||||||||||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| || |||||||    
T  36012295 tacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaaaaaattgc 36012196  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  36012195 aaaaaattt 36012187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 19124821 - 19124731
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 156  Q
    |||||| |||| ||||||   |||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||    
T  19124821 aaaaatttaaagaaattgatcaatttacagatgtttatataagaaattcagaggaatttacataagaaattgcaaaaaaattaggccggag 19124731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 49284375 - 49284497
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||| ||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  49284375 tacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 49284474  T
Q  139 acaaaatttaggccggagtccgg 161  Q
    | ||||||| | |||||| ||||    
T  49284475 aaaaaatttggcccggagcccgg 49284497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 322680 - 322584
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattc 114  Q
    |||||||||||| |   |||||||||| |||| |||||||||| |||||||| | |||| |||||||| ||||||||| ||||||||||||||||||    
T  322680 gcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 54090193 - 54090306
Alignment:
Q  35 ggtttacataaaaaa-tggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 133  Q
    ||||||||||||||| | |||||||||| || ||||||||||| |||||| | ||||||||   |||||||||| |||||||| |  ||||||| ||| |    
T  54090193 ggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttataagagtttatataataaattcagagggatttacaaaagga 54090292  T
Q  134 attgcacaaaattt 147  Q
    |||||| |||||||    
T  54090293 attgcaaaaaattt 54090306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 35018935 - 35019030
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||||||||||| ||| ||||||| |||| |||||||||| || |||||| |||| |||||  | ||||||||  |||||||||||||||||||    
T  35018935 gcaacacatttataa-ggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatataagaaattca 35019030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 46583651 - 46583575
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||    
T  46583651 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatataagaaattca 46583575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 52632536 - 52632633
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||||| |||| ||||||||||  | |||||| |||| |||||| | ||||||||| | |||||||||||||||||  |  ||||||| ||||||||    
T  52632536 tacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaatt 52632633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 24992007 - 24992081
Alignment:
Q  106 aagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaac 179  Q
    ||||||||||| | |||||||||| |||||| || ||||||  || |||||||| |||||||| |||||||||||    
T  24992007 aagaaattcagcggaatttacatatgaaattacaaaaaattagggtcggagtccaggctcgccgggccttagaac 24992081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 27863697 - 27863812
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||||||||||| | |||||||||| |||| |||| ||||| || ||||||||||| |||||||| ||||||||  |||||||||||||||||||| |    
T  27863697 gcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcagag 27863796  T
Q  119 aaatttacataagaaa 134  Q
    ||||||||||||||||    
T  27863797 aaatttacataagaaa 27863812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 13103246 - 13103120
Alignment:
Q  22 acacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaa 120  Q
    |||||||||||   |||||||| | |||| |||||||||| |||||||| |||||| |||||| | |||||||| ||||||||||||||||||||| | |    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  121 atttacataagaaattgcacaaaattt 147  Q
    |||||||||| |||||||| |||||||    
T  13103146 atttacataaaaaattgcaaaaaattt 13103120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 34103683 - 34103800
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||||||||| |||||||||||||| |||| |||| ||||| || ||||||||||| |||||  | ||||||||  |||||||||||||||||||| |    
T  34103683 gcaacacatttacaaaggtttacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttatacgggtttatataagaaattcagag 34103782  T
Q  119 aaatttacataagaaatt 136  Q
     ||||||||||| |||||    
T  34103783 gaatttacataataaatt 34103800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 28750781 - 28750655
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||||||||||||  |||||||||| ||||  ||||||||| ||||||||  | ||| |||||| | ||||||||| ||||||||||||||||||||     
T  28750781 gcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattcaga 28750682  T
Q  118 gaaatttacataagaaattgcacaaaa 144  Q
      |||||||||||||||||||| ||||    
T  28750681 agaatttacataagaaattgcaaaaaa 28750655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 9231964 - 9231840
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  || ||||||| ||||||||||    
T  9231964 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagagatttacacaagaaattgc 9231865  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | |||| || | |||||| ||||||    
T  9231864 aaaaaaattggcccggagcccgggc 9231840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 24694761 - 24694637
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  |  ||||||| ||||||||||    
T  24694761 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgc 24694662  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  24694661 aaaaaatttggcccggagcccgggc 24694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 14309908 - 14309800
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | |||||||||||||||||  |  ||||||| ||||||||||    
T  14309908 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacacaagaaattgc 14309809  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  14309808 aaaaaattt 14309800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 24497645 - 24497567
Alignment:
Q  78 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 156  Q
    |||||| | ||||||||| |||||||||||||||||||| | |||||||| || |||||||| ||||||| ||||||||    
T  24497645 aaattgcccaatttataggggtttatataagaaattcagaggaatttacacaaaaaattgcaaaaaatttgggccggag 24497567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11279538 - 11279634
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    |||||||||||||| || ||||||||| |||| |||||||||| || ||||||||||| |||||  ||||||||||    ||||||||| |||||||    
T  11279538 gcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaattaccaaatttataagaatttatataaaaaattca 11279634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 13627572 - 13627680
Alignment:
Q  53 caagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggcc 152  Q
    ||||||||| || |||||| |||| ||||||   ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||| ||||||| | ||    
T  13627572 caagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatttggccc 13627671  T
Q  153 ggagtccgg 161  Q
    |||| ||||    
T  13627672 ggagcccgg 13627680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 1728035 - 1727926
Alignment:
Q  47 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatt 146  Q
    |||| ||||| |||| || |||||| |||| ||||||   ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||| ||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatataagaaattcatagggatttacacaagaaattgcaaaaaatt 1727936  T
Q  147 taggccggag 156  Q
    | | ||||||    
T  1727935 tggcccggag 1727926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 11212669 - 11212765
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||||||||||    ||||||||| ||||  ||||||||| || ||||||||||| |||||| | ||||||||| | |||||| || |||||||    
T  11212669 gcaacacatttataggaatttacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 44164853 - 44164729
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |||||||||| ||||||||||    
T  44164853 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagaaatttacacaagaaattgc 44164754  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  44164753 aaaaaatttggcccggagcccgggc 44164729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 10334175 - 10334320
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||  | |||| ||||||| |||||| | ||||||||   |||||||||||||||||||     
T  10334175 gcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattcaga 10334274  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
    | |||||||||||||||||||| |||| || |||| ||| ||||||    
T  10334275 ggaatttacataagaaattgcaaaaaaattgggccagagcccgggc 10334320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 180
Target Start/End: Complemental strand, 17303246 - 17303082
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||||||||||  ||||||||||| |||| |||||||||| || |||||  |||||| |||||| | |||||| |  |||||||||||||||||||     
T  17303246 gcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattcat 17303147  T
Q  117 ggaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaact 180  Q
     | |||||||||||||||||||| |||| || || ||||| ||||| ||||| |||| |||||||    
T  17303146 aggaatttacataagaaattgcaaaaaaattgggtcggagcccggggtcgccaggccatagaact 17303082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 9770685 - 9770782
Alignment:
Q  47 aaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 144  Q
    |||| |||||||||| ||||||| |||||| |||||||| |||| |||| |||||||||||||||||||||   ||||||||||||||||||| ||||    
T  9770685 aaattgcaagcaaataatcaaaagtctaaagaaattgtccaattcatagtggtttatataagaaattcaggatgatttacataagaaattgcaaaaaa 9770782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 24320549 - 24320408
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| ||||||||||||||||||   | |||||||| ||||||||||    
T  24320549 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttacacaagaaattgc 24320450  T
Q  139 acaaaatttaggccggagtccgggctcg-ccggccttagaac 179  Q
    | ||||||| | |||||| ||||| ||| | |||||||||||    
T  24320449 aaaaaatttggcccggagcccgggttcgtcgggccttagaac 24320408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 33057787 - 33057636
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  | ||||||||| |||| |||||||||| || ||||| |||||| |||||||  ||||||||| || ||||||||||||||||      
T  33057787 gcaacacatttatag-gatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcata 33057689  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgccgg 170  Q
    |  ||||||||||||||||| | |||| || |||||||| ||||| |||||||    
T  33057688 gggatttacataagaaattgaaaaaaaattgggccggagcccggggtcgccgg 33057636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 34707134 - 34707258
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  34707134 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 34707233  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  34707234 aaaaaatttggcccggagcccgggc 34707258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 10576691 - 10576814
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  10576691 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 10576790  T
Q  139 acaaaatttaggccggagtccggg 162  Q
    | ||||||| | |||||| |||||    
T  10576791 aaaaaatttggcccggagcccggg 10576814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 32876640 - 32876521
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |  || |||| ||||||||||    
T  32876640 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatctacacaagaaattgc 32876541  T
Q  139 acaaaatttaggccggagtc 158  Q
    | ||||||| | ||||||||    
T  32876540 aaaaaatttggcccggagtc 32876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 29556049 - 29555951
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattg 137  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  | |||||||| |||||||||    
T  29556049 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcataggaatttacacaagaaattg 29555951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 19334676 - 19334556
Alignment:
Q  35 ggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataaga 132  Q
    |||||| |||| |||| |||||||||| || |||||  |||||| |||||||| ||||||||| |||||||||||||||||||  |  ||||||||||||    
T  19334676 ggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacataaga 19334577  T
Q  133 aattgcacaaaatttaggccg 153  Q
    ||||||| |||| || |||||    
T  19334576 aattgcaaaaaaattgggccg 19334556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 139
Target Start/End: Complemental strand, 29981223 - 29981123
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| |||||||||| ||||||||||||||||||  |  ||||||| ||||||||||    
T  29981223 tacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttacacaagaaattgc 29981124  T
Q  139 a 139  Q
    |    
T  29981123 a 29981123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 34259536 - 34259660
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  34259536 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 34259635  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | |||| || | |||||| ||||||    
T  34259636 aaaaaaattggcccggagcccgggc 34259660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 15017818 - 15017896
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 144  Q
    ||||||||||| |||||||| ||||||||   ||||||||||||||||||| | |||||||||||||||||||| ||||    
T  15017818 aaaaatctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 15017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 26284508 - 26284383
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag-g 117  Q
    ||||||||||||||  |||||||| || |||| ||||| |||| || ||||||||||| |||||||| ||||||||   |||| |||||||||||||| |    
T  26284508 gcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcagag 26284410  T
Q  118 gaaatttacataagaaattgcacaaaa 144  Q
    | | |||||||||||||||||| ||||    
T  26284409 ggattttacataagaaattgcaaaaaa 26284383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 29238253 - 29238129
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| | |||||||| || |||||| |||| ||||| || ||||| ||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  29238253 tacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatataagaaattcatagggatttacacaagaaattgc 29238154  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | |||| || | |||||| ||||||    
T  29238153 aaaaaaattggcccggagcccgggc 29238129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 41853130 - 41853226
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatc--aaaaatctaaataaattgtcaaatttatagaggtttatataagaaatt 113  Q
    |||||||||||||| ||||||| ||| ||||| |||||||||| |||  ||||||||||| |||||||| || ||||||   |||| ||||||||||    
T  41853130 gcaacacatttatagaggtttatatagaaaattgcaagcaaataatcaaaaaaatctaaaaaaattgtccaacttataggaatttaaataagaaatt 41853226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 43342486 - 43342533
Alignment:
Q  97 ggtttatataagaaattcagggaaatttacataagaaattgcacaaaa 144  Q
    |||||||||||||||||||| | |||||||||||||||||||| ||||    
T  43342486 ggtttatataagaaattcagaggaatttacataagaaattgcaaaaaa 43342533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 66 - 179
Target Start/End: Complemental strand, 20914 - 20800
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgggctc 165  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| || | |||||  || |||||    
T  20914 aaaaatctaaaaaaattgtccaatttatagagctttatataagaaattcagaggaatttacataagaaattgcaaaaaaatttgaccggatccctggctc 20815  T
Q  166 gcc-ggccttagaac 179  Q
    ||| |||||||||||    
T  20814 gccgggccttagaac 20800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 35806793 - 35806934
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||  ||| ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |    
T  35806793 gcaacacatttatag-ggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 35806891  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgg 161  Q
    | ||||||| ||||||||||| ||||||| | |||||| ||||    
T  35806892 agatttacacaagaaattgcaaaaaatttggcccggagcccgg 35806934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 42072427 - 42072570
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||  | ||||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |    
T  42072427 gcaacacatttatattg-tttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatag 42072525  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
      ||||||| ||||||||||| |||| || | |||||| ||||||    
T  42072526 ggatttacacaagaaattgcaaaaaaattggcccggagcccgggc 42072570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 21525376 - 21525484
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  21525376 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 21525475  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  21525476 aaaaaattt 21525484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 33934479 - 33934371
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  | |||||||| ||||||||||    
T  33934479 tacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatataagaaattcataggaatttacaaaagaaattgc 33934380  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  33934379 aaaaaattt 33934371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 19334799 - 19334923
Alignment:
Q  38 ttacataaaaaatggcaagcaaattatcaaa-aatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    |||||||| |||| | |||||||| || ||| ||| |||| |||||||| ||||||||||||||||||||| |||||||    |||||| ||||||||||    
T  19334799 ttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcataagaatttatataagaaatt 19334898  T
Q  137 gcacaaaatttaggccggagtccgg 161  Q
    ||| ||||||| ||||||| |||||    
T  19334899 gcaaaaaatttgggccggaatccgg 19334923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 22324614 - 22324738
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| |||||||| |    
T  22324614 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattac 22324713  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  22324714 aaaaaatttggcccggagcccgggc 22324738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 16591446 - 16591369
Alignment:
Q  78 aaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccgga 155  Q
    |||||| | ||||||||| | ||||||||||||||||   |||||||||||||||||||||| |||||||||||||||    
T  16591446 aaattgcccaatttatagtgatttatataagaaattcttagaaatttacataagaaattgcaaaaaatttaggccgga 16591369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 42013890 - 42013998
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | |||||||||  ||||||||||||||||||  |  ||||||| ||||||||||    
T  42013890 tacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatataagaaattcatagggatttacacaagaaattgc 42013989  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  42013990 aaaaaattt 42013998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 16819105 - 16818970
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaata----aattgtcaaatttatagaggtttatataagaaattca 115  Q
    |||||||||||||  |||||| ||||||||| |||||||||| || ||| | ||| |||    ||||  | ||||||||| |||||||||||||||||||    
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaata-ctagatagagaaattacccaatttataggggtttatataagaaattca 16819007  T
Q  116 gggaaatttacataagaaattgcacaaaatttaggcc 152  Q
     ||| ||||||| ||||||||||| ||||||| ||||    
T  16819006 aggagatttacaaaagaaattgcaaaaaatttgggcc 16818970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 139
Target Start/End: Original strand, 24065288 - 24065391
Alignment:
Q  36 gtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaat 135  Q
    |||||||||| |||| |||||||||| || ||||| ||||| |||||| | |||||||||  ||||||||||||||||||  || ||||| || ||||||    
T  24065288 gtttacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttataggagtttatataagaaattcatagagatttatatgagaaat 24065387  T
Q  136 tgca 139  Q
    ||||    
T  24065388 tgca 24065391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 161
Target Start/End: Original strand, 2271240 - 2271335
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggagtccgg 161  Q
    ||||||||||| |||||  | ||| ||||| ||||||||||||||||||||    ||||||||||||||||||| |||| ||||| | ||||||||    
T  2271240 aaaaatctaaagaaattacctaatatataggggtttatataagaaattcagcatgatttacataagaaattgcaaaaaaattaggtctgagtccgg 2271335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 10112044 - 10112170
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaat-aaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||| |||||||  ||||||||||| |||| ||||  |||| ||||||||  ||||  |||||||| ||||||||   |||||||||||||||| ||     
T  10112044 gcaacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaaga 10112143  T
Q  118 gaaatttacataagaaattgcacaaaa 144  Q
    | ||||||||||| |||||||| ||||    
T  10112144 ggaatttacataaaaaattgcaaaaaa 10112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 26021413 - 26021539
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattg 137  Q
    ||||||| |||| |||||||||| || ||||| | |||| |||||  | ||||||||| |||||||||||||||||||  |  ||||||| |||||||||    
T  26021413 tacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcatagggatttacaaaagaaattg 26021512  T
Q  138 cacaaaatttaggccggagtccgggct 164  Q
    || ||||||| |  ||||| |||||||    
T  26021513 caaaaaatttggcacggagcccgggct 26021539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 2824312 - 2824168
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    |||||||||||| |   |||||||||| |||| |||||||||||  |||| |   ||| || ||| | ||||||||  || |||||||||||||| || |    
T  2824312 gcaacacatttaaaggtgtttacataagaaattgcaagcaaatttgcaaataataaaaaaatttgcccaatttataaggggttatataagaaatttagag 2824213  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
     ||||||||||| |||||||| |||||| ||| ||||| ||||||    
T  2824212 gaatttacataaaaaattgcaaaaaattcaggtcggagcccgggc 2824168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 21488111 - 21488181
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||||||||| |||||||| ||||||| | ||||| |||||||||||||  | |||||||| ||||||||    
T  21488111 aaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttacacaagaaatt 21488181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 43282982 - 43282853
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaat-ctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||| ||||||||| |  ||||||||| |||| |||||||||| || |||| | ||||  |||||  | ||||||||| | ||||||||| ||||||||     
T  43282982 gcaatacatttatagatatttacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcaga 43282883  T
Q  118 gaaatttacataagaaattgcacaaaattt 147  Q
      |||||||||||||||||| | |||||||    
T  43282882 agaatttacataagaaattgtaaaaaattt 43282853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 16523155 - 16523241
Alignment:
Q  70 atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgcacaaaatttaggccggag 156  Q
    ||||||| || ||| | ||||||||| | |||||||||||||||||  |  ||||||||| ||||||| | ||||||| ||||||||    
T  16523155 atctaaagaagttgcccaatttatagggatttatataagaaattcatagggatttacatatgaaattgtaaaaaatttgggccggag 16523241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 14942173 - 14942030
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcaggg 118  Q
    ||||||||||||||| ||  ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |    
T  14942173 gcaacacatttataa-ggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatag 14942075  T
Q  119 aaatttacataagaaattgcacaaaatttaggccggagtccgggc 163  Q
      ||||||| ||||||||||| ||||||| | |||||| ||||||    
T  14942074 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggc 14942030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 29846460 - 29846584
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||||| ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  29846460 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 29846559  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  29846560 aaaaaatttggcccggagcccgggc 29846584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 40780052 - 40780171
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagag-gtttatataagaaattcag 116  Q
    |||||| |||||||  ||||||||||| |||| |||||||||| || ||||| | |||| |||||||||||||||||| | |||||||||||||||||||    
T  40780052 gcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattcag 40780151  T
Q  117 ggaaatttacataagaaatt 136  Q
     | |||||||||||||||||    
T  40780152 aggaatttacataagaaatt 40780171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 19181566 - 19181674
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  | |||||||| ||||||||||    
T  19181566 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacacaagaaattgc 19181665  T
Q  139 acaaaattt 147  Q
    | |||||||    
T  19181666 aaaaaattt 19181674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 42769868 - 42769744
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| ||||||||||    
T  42769868 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattgc 42769769  T
Q  139 acaaaatttaggccggagtccgggc 163  Q
    | ||||||| | |||||| ||||||    
T  42769768 aaaaaatttggcccggagcccgggc 42769744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 23685501 - 23685406
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaa-atctaaataaattgtcaaatttatagaggtttatataagaaatt 113  Q
    |||||| |||||||| ||||||||||| |||| |||||||||| ||||||| || ||||||||||||||||||||||  | |||||||||||||||    
T  23685501 gcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 28321834 - 28321672
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaat-aaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||  |||||| |||| |||| | |||||||| ||||||||  | ||| |||||| | ||||||||  ||||||||||||| |||||||    
T  28321834 gcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttataagggtttatataagatattcagg 28321735  T
Q  118 gaaatttacataagaaattgcacaaaatttaggccggagtccgggctcgcc-ggccttagaac 179  Q
      |||||||||||||||||||| |||| || |||  | | ||||||||||| |||||||||||    
T  28321734 agaatttacataagaaattgcaaaaaaattgggcaagtgcccgggctcgccgggccttagaac 28321672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 1387418 - 1387322
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattca 115  Q
    ||||||||||| ||| ||||||||||| |||| |||||||||| || ||||||||||| |||||  | ||||||||| ||||||| |||||||||||    
T  1387418 gcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggggtttatctaagaaattca 1387322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 41674838 - 41674716
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaat--tatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||||||||||  | |||| |||| |||| ||||||||||  |   ||||||||||| |||||||| ||||||||  ||||||||||| ||||||||    
T  41674838 gcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattcag 41674739  T
Q  117 ggaaatttacataagaaattgca 139  Q
     || |||||||||||||||||||    
T  41674738 agagatttacataagaaattgca 41674716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 14539835 - 14539706
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    ||||||||||||||   ||||| |||| |||| ||||| |||| || ||||| |||||| |||||| | |||||||||   ||||||||||||||||||     
T  14539835 gcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattcaga 14539736  T
Q  118 gaaatttacataagaaattgcacaaaattt 147  Q
    | || ||||||||||||||||| |||||||    
T  14539735 ggaaattacataagaaattgcaaaaaattt 14539706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 33009669 - 33009800
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatca--aaaatctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||| ||||||  |||||||||||||||| |||||||||| || |  |||||||||| |||||||| ||||||||  | ||||||||| |||||||     
T  33009669 gcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatataacaaattcat 33009768  T
Q  117 ggaaatttacataagaaattgcacaaaattta 148  Q
     |  ||||| ||||||||||| | ||||||||    
T  33009769 agggatttatataagaaattgtaaaaaattta 33009800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 40277398 - 40277276
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||||| |||| |||||| | ||||||||| | ||||||||||||||| |  |  |||||||||| |||||||    
T  40277398 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaatttatagggatttacataaaaaattgc 40277299  T
Q  139 acaaaatttaggccggagtccgg 161  Q
    | ||||||| | |||||| ||||    
T  40277298 aaaaaatttggcccggagcccgg 40277276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 156
Target Start/End: Complemental strand, 14186548 - 14186431
Alignment:
Q  39 tacataaaaaatggcaagcaaattatcaaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaattgc 138  Q
    ||||||| |||| |||||||||| || |||| | |||| |||||| | ||||||||| |||||||||||||||||||  |  ||||||| |||||||| |    
T  14186548 tacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattac 14186449  T
Q  139 acaaaatttaggccggag 156  Q
    | ||||||| | ||||||    
T  14186448 aaaaaatttggcccggag 14186431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 3956569 - 3956688
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagg 117  Q
    |||||||||||||| ||||||||||   |||| |||||||||| || ||||| | |||| |||||||| |||||| || ||||||||||| |||||||      
T  3956569 gcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatataataaattcata 3956668  T
Q  118 gaaatttacataagaaattg 137  Q
    |  |||||||||| ||||||    
T  3956669 gggatttacataaaaaattg 3956688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 43139760 - 43139870
Alignment:
Q  36 gtttacataaaaaatggcaagcaaattatcaaaa--atctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaa 133  Q
    ||||| |||| |||| |||||||||| || ||||  ||||||| ||||||   ||||||||| ||||||||||||||||| || | || |||||||||||    
T  43139760 gtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaattaagaggaacttacataagaa 43139859  T
Q  134 attgcacaaaa 144  Q
    |||||| ||||    
T  43139860 attgcaaaaaa 43139870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 6318590 - 6318470
Alignment:
Q  19 gcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa--tctaaataaattgtcaaatttatagaggtttatataagaaattcag 116  Q
    ||||||||||||||  || ||||||   |||| |||||||||| || |||||  |||||| |||||| | ||||||||| | |||||||||||||||||     
T  6318590 gcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatataagaaattcat 6318491  T
Q  117 ggaaatttacataagaaattg 137  Q
     |  |||||||||||||||||    
T  6318490 agggatttacataagaaattg 6318470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 2888086 - 2888156
Alignment:
Q  66 aaaaatctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaatt 136  Q
    ||||||||||| |||||||  |||||||||  |||||||||| |||||||  || ||||||||||||||||    
T  2888086 aaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattcatagagatttacataagaaatt 2888156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 25665222 - 25665316
Alignment:
Q  20 caacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaatct-aaataaattgtcaaatttatagaggtttatataagaaatt 113  Q
    ||||| |||||||  |||||  ||||||||| |||||||||| |||||||| || ||| |||||  | |||||||| | ||||||||||||||||    
T  25665222 caacatatttatagcggtttgtataaaaaattgcaagcaaataatcaaaaaacttaaagaaattacccaatttataaatgtttatataagaaatt 25665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 34566 - 34457
Alignment:
Q  36 gtttacataaaaaatggcaagcaaattatcaaaaa-tctaaataaattgtcaaatttatagaggtttatataagaaattcagggaaatttacataagaaa 134  Q
    |||||||||| |||| | |||||||| |||||||| |||||| ||| |||| ||||||||||| |||||||||  ||||||| |  ||||||||||||||    
T  34566 gtttacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattcagagggatttacataagaaa 34467  T
Q  135 ttgcacaaaa 144  Q
    ||||| ||||    
T  34466 ttgcaaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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