View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549_low_7 (Length: 257)
Name: NF4549_low_7
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549_low_7 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 30614 - 30374
Alignment:
| Q |
17 |
aaaacacactacaaaattaacaaaatgacaaaacttaggtacaattcttctggcgttgtttcaactagaaaagccaacaatttttaccatccaatatgaa |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30614 |
aaaacacactacgaaattaacaaaatgacaaaacttaggtacaattcttctggcgttgtttcaactagaaaagccaacaatttttaccatccaatatgaa |
30515 |
T |
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| Q |
117 |
agtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggttcataccaaacaaaatccaacaaaattccaatcctacccttttgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30514 |
agtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggctcataccaaacaaaatccaacaaaattccaatcctacccttttgctt |
30415 |
T |
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| Q |
217 |
ttcctnnnnnnnccagaatcatcaccacaagataaaaacat |
257 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
30414 |
ttcctaaaaaaaccagaatcatcaccacaagataaaaacat |
30374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 22188 - 22054
Alignment:
| Q |
87 |
aagccaacaatttttaccatccaatatgaaagtctctagctctttgagcagcatagttatcagcctttgatcttgtaagaggttcataccaaacaaaatc |
186 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
22188 |
aagccaacaatttttaccatccaatatgaaaatctctagctctttgagcagcatagttatcagcctttgatcttgtaagagactcataccaaactaaatc |
22089 |
T |
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| Q |
187 |
caacaaaattccaatcctacccttttgcttttcct |
221 |
Q |
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| T |
22088 |
caacaaaattccaatactacccttttgtttttcct |
22054 |
T |
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