View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4549_low_9 (Length: 250)
Name: NF4549_low_9
Description: NF4549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4549_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 1836878 - 1836633
Alignment:
| Q |
1 |
tgtatgcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatataattatgtccatgttagttggtacttgat |
100 |
Q |
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| T |
1836878 |
tgtatgcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaatatatttatgtcaatgttagttggtacttgat |
1836779 |
T |
|
| Q |
101 |
attgatactttctagtgagaaattttgtctatgccatagaaaggtatttatagatattgtgattgtgcgtacctagctttcaggtgaaactctttggaag |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836778 |
attgttactttctagtgagaaattttgtctatgccatagaaaggtatttatagatattgtgattgtgcgtacctagctttcaggtgaaactctttggaag |
1836679 |
T |
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| Q |
201 |
tgagtttcctcgtaggtgcacaaaatttgtgtttgtctgtgctgct |
246 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1836678 |
tgagtttcctcgtaggtgcacaaaatttgtgtttgtatgtgctgct |
1836633 |
T |
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