View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4550-Insertion-1 (Length: 1050)
Name: NF4550-Insertion-1
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 954; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 954; E-Value: 0
Query Start/End: Original strand, 8 - 1048
Target Start/End: Original strand, 29913632 - 29914672
Alignment:
| Q |
8 |
aattaaaggcctgtgtccttgagaaatatcatgttagtttagtagacattttattcttctagagtgatgctatacactcatctgttgttgtagtgcaact |
107 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29913632 |
aattaaaggcccgtgtccttgagaaatatcatgttagtttagtagacattttattcttctagagtgatgctatacactcatctgttgttgtagtgcaact |
29913731 |
T |
|
| Q |
108 |
attgatgcgaattcagttgaaagatacatatacatctcctgatcagtaaaatgttaataaaagttttctttctatttagtttagatagcgaacaacaaca |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29913732 |
attgacgcgaattcagttgaaagatacatatacatctccttatcagtaaaatgttaataaaagttttctttctatttagtttagatagcgaacaacaaca |
29913831 |
T |
|
| Q |
208 |
atcaaggccttttttcactaggtgggaaaactgaagtaaatttctcttggagtcaactgtttcattgctataataatttttgtttctgccttattcctta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
29913832 |
atcaaggccttttttcactaggtgggaaaactgaagtaaatttctcttggagtcaactgtttcattgcaataataacttttgtttctgccttattcctta |
29913931 |
T |
|
| Q |
308 |
gcctacctgtaccttcttttttcttgtcttgctgctattcgtccaattaaaattgttaatcaaactctttcctttaattctcaggatacttaaataatga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29913932 |
gcctacctgtaccttcttttttcttgtcttgctgctattcatcaaattaaaattgttaatcaaactctttcctttaattctcaggatacttgaataatga |
29914031 |
T |
|
| Q |
408 |
ggaagctactatatcaacaattgataaagatggttggctacatacaggagatattgtttattttgatcaggatggatatttacatctggctgaccgcttg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29914032 |
ggaagctactatatcaacaattgataaagatggttggctacatacaggagatattgtttattttgatcaggatggatatttacatctggctgaccgcttg |
29914131 |
T |
|
| Q |
508 |
aaagacattatcaaatacaagggatttcaggtatctacgtttaggtttattaaattttataaagaaaagtgatgatagattaacgagaaatgcagaattt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29914132 |
aaagacattatcaaatacaagggatttcaggtatctacttttaggtttattaaattttataaagaaaagtgatgatagattaacgagaaatgcagaattt |
29914231 |
T |
|
| Q |
608 |
tactgaaacgcacactttgtatgacacatgatctgttacagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagc |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29914232 |
tactgaaacgcacactttgtatgacacatgatctgttacagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagc |
29914331 |
T |
|
| Q |
708 |
tgttacagcgtaagtatatgaacacttcttttatgtcttcgctcctgcaatctatagaaaatgcagccatccgtaatcttctaaagtgcctctttggaca |
807 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29914332 |
tgttacagcgtaagtatatgaacacttcatttatgtcttcgctcctgcaatctatagaaaatgcagccatccgtaatcttctaaagtgcctctttggaca |
29914431 |
T |
|
| Q |
808 |
tttgattataacctcaaatgttacatcatttttccatatcagtgccgaagatgaagaaattggggaaattccagtggcgtttgttgtcaag-aggttgga |
906 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29914432 |
ttttattataacctcaaatgttacatcatttttccatatcagtgccgaagatgaagaaattggggaaattccagtggcgtttgttgtcaagaaggttgga |
29914531 |
T |
|
| Q |
907 |
agtgtactttctccgaaggatgtggtcgattatgttgctgagcaggtttttcttttgataggacatacctgagttttatgatatttggaattgatattac |
1006 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
29914532 |
agtgtactttctccgaaggatgtggtcaattatgttgctgagcaggtttttcttttgataggacatacatgagttttatgatatttgaaattgatattac |
29914631 |
T |
|
| Q |
1007 |
tacttgaatcaccgtcatgcttctacacattttaaaccttta |
1048 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||| |||||| |
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|
| T |
29914632 |
tacttgaatcaatgtcatgctt-ttcacattttaacccttta |
29914672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 1e-59; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 349 - 542
Target Start/End: Complemental strand, 11440932 - 11440739
Alignment:
| Q |
349 |
tccaattaaaattgttaatcaaactctttcctttaattctcaggatacttaaataatgaggaagctactatatcaacaattgataaagatggttggctac |
448 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||||| |
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| T |
11440932 |
tccaattgaaattattaatcaaaaattttcctttatttcttaggatacttgaataatgaggaagctacaatgtcaacagttgataaagatggttggctac |
11440833 |
T |
|
| Q |
449 |
atacaggagatattgtttattttgatcaggatggatatttacatctggctgaccgcttgaaagacattatcaaatacaagggatttcaggtatc |
542 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||| || || |||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
11440832 |
atactggagatattgtttattttgatcaagatggatatttatatttgtctgaccgcttgaaagaatttatcaaatacaagggctttcaggtatc |
11440739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 280 - 542
Target Start/End: Complemental strand, 11451517 - 11451259
Alignment:
| Q |
280 |
ataatttttgtttctgccttattccttagcctacctgtaccttcttttttcttgtct-tgctgctattcgtccaattaaaattgttaatcaaactctttc |
378 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |||||||| |||| | ||||| | |||||||| || || ||||| ||| |||| | |||| |
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| T |
11451517 |
ataaattttgtttctgtcttattccttagcctacttgtacctt--ttttgcctgtctcttttgctattc---catttgaaattcataaccaaattttttc |
11451423 |
T |
|
| Q |
379 |
ctttaattctcaggatacttaaataatgaggaagctactatatcaacaattgataaagatggttggctacatacaggagatattgtttattttgatcagg |
478 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |
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| T |
11451422 |
ctttatttcataggatacttgaataatgaggaagctacaatgtcaacaattgataaagatggttggatacatactggagatattgtttattttgatcaag |
11451323 |
T |
|
| Q |
479 |
atggatatttacatctggctgaccgcttgaaagacattatcaaatacaagggatttcaggtatc |
542 |
Q |
| |
|
||||||||||| || || ||| ||| |||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
11451322 |
atggatatttatatatgtctggccgtttgaaagacattataaaatacaagggctttcaggtatc |
11451259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 627 - 723
Target Start/End: Complemental strand, 11451176 - 11451080
Alignment:
| Q |
627 |
tatgacacatgatctgttacagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagctgttacagcgtaagta |
723 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| || ||||||||||||||| |
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| T |
11451176 |
tatgatacatgatctattacagattgctcctgctgatttagaagctttgttaatttcgcatcctgaaatagttgatgccgccgttacagcgtaagta |
11451080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 837 - 954
Target Start/End: Complemental strand, 11440498 - 11440380
Alignment:
| Q |
837 |
ttttccatatcagtgccgaagatgaagaaattggggaaattccagtggcgtttgttgtcaaga-ggttggaagtgtactttctccgaaggatgtggtcga |
935 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
11440498 |
ttttccacatcagtgcaaaggatgaagaagctggggagattccagtggcatttgtggtcaagaaggttggaagtgtactttctccaaaggatgttatcga |
11440399 |
T |
|
| Q |
936 |
ttatgttgctgagcaggtt |
954 |
Q |
| |
|
|| |||||| |||||||| |
|
|
| T |
11440398 |
tttcgttgctaagcaggtt |
11440380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 646 - 747
Target Start/End: Complemental strand, 11440642 - 11440541
Alignment:
| Q |
646 |
cagattgctcctgctgatttagaagccgtgttaattttgcatcctgaaataattgatgcagctgttacagcgtaagtatatgaacacttcttttatgtct |
745 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||||||||||||||||||| ||||| || ||||||| ||||||||||||| || || | ||||||| |
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|
| T |
11440642 |
cagattcctcctgctgatttagaagctgttttaattttgcatcctgaaatagctgatgtcgccgttacagggtaagtatatgaaaacatcatgtatgtct |
11440543 |
T |
|
| Q |
746 |
tc |
747 |
Q |
| |
|
|| |
|
|
| T |
11440542 |
tc |
11440541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 784 - 959
Target Start/End: Complemental strand, 11451047 - 11450872
Alignment:
| Q |
784 |
tcttctaaagtgcctctttggacatttgattataacctcaaatgttacatcatttttccatatcagtgccgaagatgaagaaattggggaaattccagtg |
883 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| || | | | |||||||||||| | ||||||||| | | | ||| | | |||||| ||||||||| |
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|
| T |
11451047 |
tcttctaaagtgcctctttggacattaaaatatgactttgagtattacatcatttt-cgatatcagtggcaaggttgatgtagctggggagattccagtg |
11450949 |
T |
|
| Q |
884 |
gcgtttgttgtcaagag-gttggaagtgtactttctccgaaggatgtggtcgattatgttgctgagcaggtttttct |
959 |
Q |
| |
|
|| ||||| ||||||| || ||||||||||||||| | || ||||| ||||||| |||||| |||||||| |||| |
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|
| T |
11450948 |
gcatttgtggtcaagaaagtcggaagtgtactttcttcacagcatgtgatcgattacgttgctaagcaggttcttct |
11450872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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