View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550-Insertion-4 (Length: 582)
Name: NF4550-Insertion-4
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 34837025 - 34836904
Alignment:
| Q |
12 |
tgtgctctatctatgaacatatatagtagaatatgttagaaaaaagtaagctaaatgannnnnnn-gacaaaacacaaatgaattagggtatatgcaaat |
110 |
Q |
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| T |
34837025 |
tgtgctctatctatgaatatatatagtaaaatatgttagaaaaaagtaagctaaataattttttttgacaaaacacaaatgaattaaggtatatgcaaat |
34836926 |
T |
|
| Q |
111 |
taaaacatgtacatttcagagt |
132 |
Q |
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| T |
34836925 |
taaaacatgtacattccagagt |
34836904 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 293
Target Start/End: Complemental strand, 39770384 - 39770267
Alignment:
| Q |
177 |
ttaatcagcaaatattgttgagctgggttagcacaagaagcactgtacc-gcataggaggaaaaagagtatacaagtgcctgaaaataaaagcacctaaa |
275 |
Q |
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| T |
39770384 |
ttaatcagcaaattttattaaactaggttagtacaagatgcactatacccgcaaaggaggaaaaagagtacaatagtgcccgaaaacgaaagcacctaac |
39770285 |
T |
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| Q |
276 |
caccaaactgtctcatta |
293 |
Q |
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| T |
39770284 |
cacaaaattgcctcatta |
39770267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 316
Target Start/End: Complemental strand, 43365584 - 43365497
Alignment:
| Q |
230 |
aggaggaaaaagagtatacaagtgcctgaaaataaaagcacctaaacaccaaactgtctcattaaaaaa-cctcctaacaatcctaat |
316 |
Q |
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| T |
43365584 |
aggaggaaaaagagtacaatattgcctaaataataaggcacctaaacaccaaattgcctcactaaaaaaacctcctaacaatcctaat |
43365497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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