View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550-Insertion-5 (Length: 473)
Name: NF4550-Insertion-5
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 22928653 - 22929046
Alignment:
| Q |
8 |
gattgtgtcatgaaaaatgctgaaagaaaaatccagaagattggtcaaaaaatttcttaaatattcaacttcgacatagttacttgatatctatattaaa |
107 |
Q |
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| T |
22928653 |
gattgtgtcatgaaaaatgctgaaagaaaa-tccaaaagattagtcaaaaaaattcttaaatattcaacttcgacatagttacttgatatctatattaaa |
22928751 |
T |
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| Q |
108 |
atagaaattagcaagtacttatctaagtatttatcataaattgagacacggtacttagaaaaccttttagtccaattccatctataaatgttcttaagag |
207 |
Q |
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| T |
22928752 |
agagaaattagcaagtacttatctaagtatttatcaaaaattgaaacacggtacttagaaaacc-tttagtccaattccatctataaatgttcttaagag |
22928850 |
T |
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| Q |
208 |
ggtgtgtgtcaagtccttataaggtgtatcgttgtctgtaac-----tcttgcgtttttccttaattcaatttttccccttttgtttagatgtcattgtg |
302 |
Q |
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| T |
22928851 |
ggtgtgtgtcaagtccttataaggtgtatcgttgtatctaacacttttcttgcgtttttccttaattcaatttttccccttttgtttagatgtcattgtg |
22928950 |
T |
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| Q |
303 |
tttgattgaaattagcattcttttaattattttgttcacaacttcagtagacatagatttgaagaaaacaagatcatgaagactttaggtgtcacc |
398 |
Q |
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| T |
22928951 |
tttgattgaaattagcattcttttaattattttgttcacaacttcagtagacatagatttgaagaaaacaagatcatgaagactttaggtgtcacc |
22929046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 47 - 394
Target Start/End: Original strand, 31420004 - 31420367
Alignment:
| Q |
47 |
attggtcaaaaaatttcttaaatattcaacttcgacatagttacttgatatctatattaaaatagaaattagcaagtacttatctaagtatttatcataa |
146 |
Q |
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|||| |||||||||| |||||||||||||||| |||||| | ||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||| |
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| T |
31420004 |
attgatcaaaaaattggttaaatattcaacttcctcatagtcgcctgatatctatattaaaagacaaattagcaagtagttatctaagaatttctcataa |
31420103 |
T |
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| Q |
147 |
attgagacacg--------gtacttagaaaaccttttagtccaattccatctataaatgttcttaagagggtgtgtgt--caagtccttataaggtgtat |
236 |
Q |
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| T |
31420104 |
attgagacacgtaatgccgggacttagaaaacattttagtccaattctatctataaatgttcttaagagggtgtgtgtgtcaagtccttataatgtgtat |
31420203 |
T |
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| Q |
237 |
cgttgtctgtaactcttgc-----gtttttccttaattcaa-tttttccccttttgtttagatgtcattgtgtttgattgaaattagcattcttttaatt |
330 |
Q |
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||||| |||||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31420204 |
cgttggatgtaactcttatcttaggtttttccttcattcaaattttttcccttttgtttagatgtcattgtgtttgattgcaattagcattcttttaatt |
31420303 |
T |
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| Q |
331 |
attttgttcacaacttcagtagacatagatttgaagaaaacaagatcatgaagactttaggtgt |
394 |
Q |
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| T |
31420304 |
attttattcacaacttcaatagacatagataaaaaaaaatgaagaacatgaagactctaggtgt |
31420367 |
T |
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