View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550-Insertion-6 (Length: 438)
Name: NF4550-Insertion-6
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 38583796 - 38584045
Alignment:
| Q |
7 |
ataatggacgtaaattttaatgtttttctcgacagcatgcagtaactgaaggtagatacgtgttgaatgaaagttaaacagaaccaacaaagattcgtaa |
106 |
Q |
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| T |
38583796 |
ataatggacgtaaattttaatgtttttctcgacagcatgcagcaactgaaggtagatacgtgttgaatgaaagttaaacagaaccaacaaagattcgtaa |
38583895 |
T |
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| Q |
107 |
caatctataattaacgatgtcgaatgatgttgtgaaagtgaagagagaaacgattgcagcatgcatgacctgtccactatgtaacaatttgttcaaacaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38583896 |
caatctataattaacgatgtcgaatgatgttgtgaaagtgaagagagaaacgattgcagcatgcatgacctgtccactatgtaacaatttgttcaaacaa |
38583995 |
T |
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| Q |
207 |
cctacaactatatctgaatgtcttcacacgtgtaagctcttcgatctata |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38583996 |
cctacaactatatctgaatgtcttcacacgtgtaagctcttcgatctata |
38584045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 38584109 - 38584185
Alignment:
| Q |
320 |
acttcttcatgtgggtcactgttcattcagattcatatggttggttatttcgtaattttgatgattgtcaaaaaaat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38584109 |
acttcttcatgtgggtcactgttcattcagattcatatggttggttatttcgtaattttgatgattgtcaaaaaaat |
38584185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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