View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4550_high_4 (Length: 442)

Name: NF4550_high_4
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4550_high_4
NF4550_high_4
[»] chr2 (14 HSPs)
chr2 (214-432)||(31612911-31613129)
chr2 (18-187)||(31613156-31613330)
chr2 (50-188)||(31608652-31608794)
chr2 (342-432)||(31608375-31608465)
chr2 (304-367)||(31605315-31605378)
chr2 (304-432)||(31623784-31623912)
chr2 (304-380)||(31608574-31608647)
chr2 (304-362)||(31619231-31619289)
chr2 (147-188)||(31619297-31619338)
chr2 (118-188)||(31624067-31624133)
chr2 (304-431)||(31623932-31624059)
chr2 (334-383)||(31605227-31605276)
chr2 (221-253)||(31619235-31619267)
chr2 (118-188)||(31605386-31605455)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 214 - 432
Target Start/End: Complemental strand, 31613129 - 31612911
Alignment:
Q  214 ttgctgctggaaagaaaccaatgggtagcacaggaagcgggggattggggcatgaaccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 313  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31613129 ttgctgctggaaagaaaccgatgggtagcacaggaagcggaggattggggcatgatccaacatcgacaaatgattatgatgatgaacatgacaaaaacaa 31613030  T
Q  314 aacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 413  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31613029 aacaaaagttaatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccacca 31612930  T
Q  414 aaaaattctgatgatgatg 432  Q
    |||||||||||||||||||    
T  31612929 aaaaattctgatgatgatg 31612911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 31613330 - 31613156
Alignment:
Q  18 gtgtacacattaatgactcatggttatctctaaacacgttaaaaatttatttagcaaccagtttaattaagaaactaatttgagatcaatagattttata 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31613330 gtgtacacattaatgactcatg-ttatctctaaacacgttaaaaatttatttagcaaccagtttaattaagaaactaatctgagatcaatagattttata 31613232  T
Q  118 atcattggacagta------tacatgaatgatgaatataacaatatttgttgttaatttctcttcagaaaatgtgc 187  Q
    ||||||||||||||      ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  31613231 atcattggacagtatacacatacatgaatcatgaatataactatatttgttgttaatttctcttcagaaaatgtgc 31613156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 31608794 - 31608652
Alignment:
Q  50 aacacgttaaaaatttatttagcaaccagtttaattaagaaactaatttgagatcaatagattttat----aatcattggacagtatacatgaatgatga 145  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    |||||||||||||||||||||||||| ||    
T  31608794 aacacgttaaaaatttatttagcaaccagtttaattaagatactaatttgggatcaatagattttatttataatcattggacagtatacatgaatgacga 31608695  T
Q  146 atataacaatatttgttgttaatttctcttcagaaaatgtgct 188  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  31608694 atataactatatttattgttaatttctcttcagaaaatgtgct 31608652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 342 - 432
Target Start/End: Complemental strand, 31608465 - 31608375
Alignment:
Q  342 ggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaacaaatccaccaaaaaattctgatgatgatg 432  Q
    |||||||||||||||| ||| ||||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||    
T  31608465 ggtagcacaggaagcgaaggtttggggactgatccgcaaatggagaatcctcagctaccaacaaatccaccaaaaaattctgatgatgatg 31608375  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 367
Target Start/End: Complemental strand, 31605378 - 31605315
Alignment:
Q  304 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggg 367  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  31605378 acaaaaacaaaacaaaagttgatcgaaagaaaccaataggtagcacaggaggcggaggattggg 31605315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 432
Target Start/End: Complemental strand, 31623912 - 31623784
Alignment:
Q  304 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 403  Q
    |||||| |||||| ||||||  || || |||||||  ||||||||||||  | |||||||||||||||| ||| || ||| ||| | |   ||||||||     
T  31623912 acaaaaccaaaaccaaagttggtcgaaggaaaccaccaggtagcacaggtggaggaggattggggactggtccacacacgaatattacaaagctaccaaa 31623813  T
Q  404 aaatccaccaaaaaattctgatgatgatg 432  Q
    ||||||||||||| |||||||||||||||    
T  31623812 aaatccaccaaaagattctgatgatgatg 31623784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 31608647 - 31608574
Alignment:
Q  304 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaa 380  Q
    |||||||||||||||||||| || ||| ||||||||||| |||  |||||   ||||||||||||||||||||||||    
T  31608647 acaaaaacaaaacaaaagtttatgcaatgaaaccaatagttagaccagga---ggaggattggggactgatccgcaa 31608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 31619289 - 31619231
Alignment:
Q  304 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggagga 362  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||||||||||||||    
T  31619289 acaaaaacaaaacaaaagttgttggaaagaaaccaatgggtagcacaggaagcggagga 31619231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 31619338 - 31619297
Alignment:
Q  147 tataacaatatttgttgttaatttctcttcagaaaatgtgct 188  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  31619338 tataactatatttgttgttaatttctcttcagaaaatgtgct 31619297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 31624133 - 31624067
Alignment:
Q  118 atcattggacagtatacatgaatgatgaatataacaatatttgttgttaatttctcttcagaaaatgtgct 188  Q
    |||||||| || ||||||||||| ||||||||||| ||||||||||    |||||||||||||||||||||    
T  31624133 atcattgggcaatatacatgaatcatgaatataactatatttgttg----tttctcttcagaaaatgtgct 31624067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 431
Target Start/End: Complemental strand, 31624059 - 31623932
Alignment:
Q  304 acaaaaacaaaacaaaagttcatccaaagaaaccaataggtagcacaggaagcggaggattggggactgatccgcaaacgcataatcctctgctaccaac 403  Q
    ||||||||||||||||||||  |  |||||||||||  ||||| | ||||||  ||||||||||||||| |||  ||||| | ||| ||| |  |  |||    
T  31624059 acaaaaacaaaacaaaagttgttggaaagaaaccaacgggtaggaaaggaagaagaggattggggactggtccaaaaacggagaatgctcagggaataac 31623960  T
Q  404 aaatccaccaaaaaattctgatgatgat 431  Q
    || ||||||||||| |||||||||||||    
T  31623959 aattccaccaaaaacttctgatgatgat 31623932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 31605276 - 31605227
Alignment:
Q  334 aaccaataggtagcacaggaagcggaggattggggactgatccgcaaacg 383  Q
    ||||||| |||||||||||||||||||||  |||||||||| ||||||||    
T  31605276 aaccaatgggtagcacaggaagcggaggaaaggggactgatgcgcaaacg 31605227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 253
Target Start/End: Complemental strand, 31619267 - 31619235
Alignment:
Q  221 tggaaagaaaccaatgggtagcacaggaagcgg 253  Q
    |||||||||||||||||||||||||||||||||    
T  31619267 tggaaagaaaccaatgggtagcacaggaagcgg 31619235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 31605455 - 31605386
Alignment:
Q  118 atcattggacagtatacatgaatgat---gaatataacaatatttgttgttaatttctcttcagaaaatgtgct 188  Q
    ||||||||||| |||| |||||||||   ||||||||| ||||||||||||    |||||||||||||||||||    
T  31605455 atcattggacaatatagatgaatgatattgaatataactatatttgttgtt----tctcttcagaaaatgtgct 31605386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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