View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550_high_8 (Length: 299)
Name: NF4550_high_8
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 40553436 - 40553160
Alignment:
| Q |
1 |
agaaaaggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaaa |
100 |
Q |
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| T |
40553436 |
agaaaaggatgcatgattcaccttgaaatgttggtgttctcgagcagttctacaagcttatcagattggctaaaatgaactatcttgtaaataacagaaa |
40553337 |
T |
|
| Q |
101 |
ggcatccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaaataaaatgtagcnnnnnnnnnnnnnnnnnnagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
40553336 |
ggcatccatgacaaacatatgtatttggatctgaattaaccacctgtcaagggtgaagtacaaattaaaatgtagctttttattttttatttttagaaaa |
40553237 |
T |
|
| Q |
201 |
ggtctgcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactctaattgctattgagtccgcat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40553236 |
ggtctgcgacaacaattcatattgcaatatcaaggtttttgatgtctcagcgactttaattgctattgagtccgcat |
40553160 |
T |
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