View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4550_high_9 (Length: 293)

Name: NF4550_high_9
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4550_high_9
NF4550_high_9
[»] chr6 (8 HSPs)
chr6 (20-282)||(6515091-6515353)
chr6 (20-197)||(6506485-6506662)
chr6 (36-184)||(6466345-6466493)
chr6 (18-181)||(6519570-6519733)
chr6 (20-178)||(6472042-6472200)
chr6 (27-182)||(6497687-6497842)
chr6 (21-172)||(6529223-6529374)
chr6 (20-183)||(6460823-6460986)
[»] chr7 (2 HSPs)
chr7 (30-182)||(9664312-9664464)
chr7 (36-144)||(3752846-3752954)
[»] chr4 (1 HSPs)
chr4 (30-182)||(13535336-13535488)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 6515091 - 6515353
Alignment:
Q  20 ccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6515091 ccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacct 6515190  T
Q  120 gaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatctcgctattccaattcttcattcctataccaggaagtca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6515191 gaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatctcgctattccaattcttcattcctataccaggaagtca 6515290  T
Q  220 aagacgacgatattggtgtcactgtatctactatacagaagaacttcagtccacttgatgatg 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  6515291 aagacgacgatattggtgtcactgtatctactatacagaagaacttgagtccactttatgatg 6515353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 6506662 - 6506485
Alignment:
Q  20 ccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacct 119  Q
    |||||| |||||||| |||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||  |||||   | |||||  |||||    
T  6506662 ccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacct 6506563  T
Q  120 gaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatctcgctattccaattct 197  Q
    |||||| | |||||||||||||||| |||| ||||||||||||||||| | ||||||||  |||||| ||| ||||||    
T  6506562 gaatactttcatccttacctcatcaaatcatcaaactcatcactttctgtctcataccctactcgctcttcgaattct 6506485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 6466493 - 6466345
Alignment:
Q  36 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 135  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||| | | |||||   |||||||||||| ||||| |    
T  6466493 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 6466394  T
Q  136 acctcatcagatcaacaaactcatcactttctttttcatacccatctcg 184  Q
    | ||||||| |||  ||||||||||||||||| |||| |||||||||||    
T  6466393 atctcatcaaatcttcaaactcatcactttctctttcttacccatctcg 6466345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 6519570 - 6519733
Alignment:
Q  18 caccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacac 117  Q
    |||||||| |||||||| |||||||| |||||| | ||||| | ||||||||| ||||||||||||||||||||||||  ||||| | | |||||   ||    
T  6519570 caccctgacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaac 6519669  T
Q  118 ctgaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatc 181  Q
    ||||||| || ||||| |||||||| | |||| ||||||||||||||||| |||| ||||||||    
T  6519670 ctgaatatattcatccatacctcattaaatcatcaaactcatcactttctgtttcttacccatc 6519733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 6472042 - 6472200
Alignment:
Q  20 ccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacct 119  Q
    |||||| |||||||| |||||||| |||||| | ||||| ||||||||||| ||||||||||||||||||||| ||   || | | | |||||   ||||    
T  6472042 ccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacct 6472141  T
Q  120 gaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcataccc 178  Q
    |||||||| |||||||||||||||| |||| ||||||||||||||||| |||| |||||    
T  6472142 gaatacattcatccttacctcatcaaatcatcaaactcatcactttctgtttcttaccc 6472200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 6497842 - 6497687
Alignment:
Q  27 ccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaataca 126  Q
    |||||||| ||||||||   |||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||   | |||||   |||||||||      
T  6497842 ccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatatt 6497743  T
Q  127 tccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatct 182  Q
    | |||||||||||||||| |||| || |||||||||||||| ||||||| ||||||    
T  6497742 ttcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatct 6497687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 6529374 - 6529223
Alignment:
Q  21 cctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctg 120  Q
    ||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||  |||||   | |||||   |||||    
T  6529374 cctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctg 6529275  T
Q  121 aatacatccatccttacctcatcagatcaacaaactcatcactttctttttc 172  Q
    ||||||| ||||| || ||||||| |||  || |||||||||||||| ||||    
T  6529274 aatacattcatccatatctcatcaaatcttcagactcatcactttctatttc 6529223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 6460823 - 6460986
Alignment:
Q  20 ccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacct 119  Q
    |||||| |||||||| ||||||||  ||||||| ||||| | ||| ||||| |||||||| |||||||||||||||  ||||    | |||||   |||     
T  6460823 ccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccg 6460922  T
Q  120 gaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatctc 183  Q
    |||||| | ||||||||||||||||||||  | |||||||| |||||| | ||||| |||||||    
T  6460923 gaatactttcatccttacctcatcagatcttccaactcatctctttctgtctcatatccatctc 6460986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 9664312 - 9664464
Alignment:
Q  30 tccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatcc 129  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| | | |||||   |  ||||||||| |    
T  9664312 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 9664411  T
Q  130 atccttacctcatcagatcaacaaactcatcactttctttttcatacccatct 182  Q
    | ||||| ||| ||| |||  | ||||||||||||||| |||| || ||||||    
T  9664412 acccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatct 9664464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 3752846 - 3752954
Alignment:
Q  36 ttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatccatcctt 135  Q
    |||||||| | ||| || ||||| ||||||||||| ||||||||||||||||||||||||  ||||    | ||||| |||||||||||||| || ||||    
T  3752846 ttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacctgaatacattcaccctt 3752945  T
Q  136 acctcatca 144  Q
    |||||||||    
T  3752946 acctcatca 3752954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 13535336 - 13535488
Alignment:
Q  30 tccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacctgaatacatcc 129  Q
    ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| | | |||||   |  ||||||||| |    
T  13535336 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 13535435  T
Q  130 atccttacctcatcagatcaacaaactcatcactttctttttcatacccatct 182  Q
    | ||||| ||| ||| |||  | ||||||||||||||| |||| || ||||||    
T  13535436 acccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatct 13535488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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