View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4550_low_1 (Length: 562)

Name: NF4550_low_1

Description: NF4550

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4550_low_1

[»] chr2 (1 HSPs)

Alignment Details

Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 513; E-Value: 0

Query Start/End: Original strand, 18 - 562

Target Start/End: Original strand, 15661750 - 15662294

Alignment:

Q	18	cttttcaataacgttaccatgaaataagcacaatgctttagatttaaaagcaattagtcacataatacattcatccaaaataacaataaaatttattgtt	117	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15661750	cttttcattaacgttaccatgaaataagcacaatgctttagatttaaaagcaattagtcacataatacattcatccaaaataacaataaaatttattgtt	15661849	T

Q	118	tgacacaaacttgattcttctaacgaatcatacgtttacttggcctaaataaagaactacaaatgtaggcggaatacactatatcagaccacagagaaaa	217	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15661850	tgacacaaacttgattcttctaacgaatcatacgtttacttggcctaaataaagaactacaaatgtaggcggaatacactatatcagaccacagagaaaa	15661949	T

Q	218	ctgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttatgtagaaagcacta	317	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15661950	ctgtaaacatataaacaacggtatcggtaaaaatgcaagaacagaaataaaattaggaacccatttcaaaccatgataatatgttatgtagaaagcacta	15662049	T

Q	318	ctaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatcttgctccgcatatc	417	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	15662050	ctaaatgctatcatcatgctgattatagacacaaacaatgccactagtccagatatcaacttcaaaggcagtgacttgagaaaatcttgctccgcatatc	15662149	T

Q	418	gcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatgccggcttatctac	517	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	15662150	gcgagataaggatggatagaaatatcaagattgaagttgaagacgagataagtgccatggagtcggataaagcaaatacgaggaatgcaggtttatctaa	15662249	T

Q	518	ataattatgagattctgtgttatcattttttccaccttgtaagct	562	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	15662250	ataattaggagattctttgttatcattgtttccacctggtaagct	15662294	T

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