View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550_low_3 (Length: 507)
Name: NF4550_low_3
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 6854816 - 6855059
Alignment:
| Q |
20 |
tcaagcacatgccagctcttgactaa---gtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaatag |
116 |
Q |
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| T |
6854816 |
tcaagcacataccagctcttgactaataagtggtagatgttaggaagcttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaatag |
6854915 |
T |
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| Q |
117 |
gagaaaacatcccctccaagggttcccttcgcattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaatt |
216 |
Q |
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| T |
6854916 |
gagaaaacatcccctccaagggttcccttcacattaggaaatactacaacgttcaaagatggttctctctatcattttcttcccttatttatacaaaatt |
6855015 |
T |
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| Q |
217 |
aacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
260 |
Q |
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| T |
6855016 |
aacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
6855059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 313 - 497
Target Start/End: Original strand, 6855057 - 6855241
Alignment:
| Q |
313 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
412 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
413 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
497 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
6855241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 211 - 446
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
211 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
309 |
Q |
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|||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||| |
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| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
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| Q |
310 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
409 |
Q |
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| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
410 |
tcgaacagcaccaccagataaaacaccaccatatgca |
446 |
Q |
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| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 226 - 394
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
226 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
324 |
Q |
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|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
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| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
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| Q |
325 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
394 |
Q |
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| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 405 - 493
Target Start/End: Complemental strand, 24245067 - 24244979
Alignment:
| Q |
405 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactc |
493 |
Q |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactc |
24244979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 6823591 - 6823549
Alignment:
| Q |
20 |
tcaagcacatgccagctcttgactaagtggtagatgttaggaa |
62 |
Q |
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| T |
6823591 |
tcaagcacatgccagctcttgaccaactggtagaagttaggaa |
6823549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 394
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
324 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
394 |
Q |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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