View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4550_low_4 (Length: 470)
Name: NF4550_low_4
Description: NF4550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4550_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 184 - 458
Target Start/End: Original strand, 46093330 - 46093597
Alignment:
| Q |
184 |
aaccatgcaaaagtgtatttgcactattgccccatcatcgtcgagttatcgcatttgatgctgatacgggtataataaataatcatgtagtgaaagtggc |
283 |
Q |
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| T |
46093330 |
aaccatgcaaaagtgtatttgcactattgccccatcatcgtcgagttatcgcatttgatgctggtacgggtataa-------tcatgtagtgaaagtggc |
46093422 |
T |
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| Q |
284 |
caatttggtaaccatataaaacacataataattcataggggccagttctgaaagctgtagcnnnnnnngttcataatatgccgttttacctcaaacatgt |
383 |
Q |
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| T |
46093423 |
caatttggtaaccatataaaacacataataattcataggggccagttctaaaagctgtagctttttttgttcataatatgcc-atttacctcaaacatgt |
46093521 |
T |
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| Q |
384 |
aactttccaatttgagttaccaagaggtcccaatttctgaataacatgtatgtgga-cggttggggaatttagaat |
458 |
Q |
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| T |
46093522 |
aactttccaatttgagttaccaagaggtcccaatttctgaataacatgtatgtggaccggttggggaatttagaat |
46093597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 46093238 - 46093274
Alignment:
| Q |
60 |
aatattgcttaattatcataaaaacttaaatattttg |
96 |
Q |
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| T |
46093238 |
aatattgcttaattatcataaaaacttaaatattttg |
46093274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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