View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4551-Insertion-1 (Length: 1033)
Name: NF4551-Insertion-1
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 6 - 974
Target Start/End: Original strand, 38389998 - 38390964
Alignment:
| Q |
6 |
cataaccaaggtaggtaaggcggaagccatcgtatttagtagagtcatgatgcaacagcttgtatttaagcaagtttttcagaaccttgtaggtgccacc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38389998 |
cataaccaaggtaggtaaggcggaagccatcgtatttagtagagtcatgatgcaacagcttgtgtttaagcaagtttttcagaaccttgtaggtgccacc |
38390097 |
T |
|
| Q |
106 |
atgtttgagacgagcaattcggtcgatgagttcagcagggacaatttcgtggtttctcatgcccaattcaacggcggtgagaaccctaaaatcatcttta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38390098 |
atgtttgagacgagcaattcggtcgatgagttcagcagggacaatttcgtggtttctcatgcccaattcaacggcggtgagaaccctaaaatcatcttta |
38390197 |
T |
|
| Q |
206 |
gagaggtatctcaaaacatctacgtcaagcttcattttcgaatttcttcttagttatcagactctcactctctgctgattcctatatgtgaaaattgcag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
38390198 |
gagaggtatctcaaaacatctacgtcaagcttcattttcgaattttatcgtagttatcagactctcactctctgctgattccgatatgtgaaaattgcag |
38390297 |
T |
|
| Q |
306 |
cggacgacggagaatggagcggtggtgtaagtcgttggacggcggggactggactttcacaatttgcattacagttttgtgtgtgagtgtaatagctttc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
38390298 |
cggacgacggagaatggagcggtggtgtaagtcgtcggacggcggggactggactttcacaatttgcattccagttttgtgtgcgagtgtaatagctttc |
38390397 |
T |
|
| Q |
406 |
gtgaatcgggttaagtttcgtgaatcgggcgggtatcgggtttagggtttatcattaacctaataaaaaagtttacc-nnnnnnnnnngtctcgatnnnn |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
38390398 |
gtgaatcgggttaagtttcgtgaatcgggcgggtattggatttagggtttatcattaacctaataaaaaaatttaccaaaaaaaaaaagtctcgataaaa |
38390497 |
T |
|
| Q |
505 |
nnntacactttttgtttttgctctttactcttcacagatagcacacaatcaagtaggagagtatagttgaaataaatttttagtcctctaattctaaaat |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38390498 |
aaatacactttttgtttttgctctttactcttcacagatag--cacaatcaagtaggagagtataattgagataaatttttagtcctctaattctaaaat |
38390595 |
T |
|
| Q |
605 |
cagannnnnnnnnnnnnnnnnnnnaaagaaactaaaatggattatattaaacttcccaagcacaaagagtgctaagggatcaccaaaaatttacaaaagc |
704 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
38390596 |
cag----ctttttaattttttttttaagaaattaaaatggattatattaaacttcccaagcacaaggaatcctaagggatcaccaaaaatttacaaaagc |
38390691 |
T |
|
| Q |
705 |
gtaagaacataaacatagtacaaaggatgaaaaaataagcaccaaaatcaacctatgcccatacacagtagaggactaagccactacatatggtaatcaa |
804 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
38390692 |
gtaacaacataaacatagtacaaagaatgaaaaaataagcaccaaaatcaacatatgcccatacacagtagaggactaagccactacctatggtaatcaa |
38390791 |
T |
|
| Q |
805 |
atgacaagttaggaaactttgcctttaaccatc-aaacgagagaagcttaacactgtcaataagttgtaaagt-gaggccggtttatctcaaaac-atat |
901 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||| |||| |
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|
| T |
38390792 |
aggacaagttagggaactttgcctttaaccaccaaaacgagagaagcttaacattgtcaataagctgtaaagtggaggccggtttatctgaaaacaatat |
38390891 |
T |
|
| Q |
902 |
gccattttttgtccttccaaataacccaaatgc-agtgcaccaaattattacaagccaaacacggtgagatttg |
974 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
38390892 |
gcta-cttttgtccttccaaataacccaaatgcaagtgcaccaattcattacaagccaaacacggtgagatttg |
38390964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 322 - 475
Target Start/End: Original strand, 34444363 - 34444519
Alignment:
| Q |
322 |
gagcggtggtgtaagtcgttggacggcggggactggactttcacaatttgcattacagttttgtgtgtgag--------tgtaatagctttcgtgaatcg |
413 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
34444363 |
gagcggtggtgtaagtcgtcgggcggcggtaactggactttcacaatttgcattg-agttttgtgtgtgagagcgagagtgtaatatctttcgtgtatcg |
34444461 |
T |
|
| Q |
414 |
ggttaagtttcgtgaatcgggcgggtatcgggtttagggtttatcattaacctaataaaaaa |
475 |
Q |
| |
|
||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
34444462 |
ggttaagtttc----ttcgggcgggtattgggtttcgggtttatcattaacctaataaaaaa |
34444519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 630 - 972
Target Start/End: Original strand, 27888965 - 27889308
Alignment:
| Q |
630 |
aagaaactaaaatggattatattaaacttcccaagcacaaagagtgctaagggatcaccaaaaatttacaaaagcgtaagaacataaacatagtacaaag |
729 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| ||||||| | ||| |||||| | ||||||| ||| || | |||| || |||| |
|
|
| T |
27888965 |
aagaaactaatatgaattatattaaacttcccaagcacaaggagtgcttaaggaaaaccaaacggtcacaaaagtataacaatagcaacagagagcaaa- |
27889063 |
T |
|
| Q |
730 |
gatgaaaaaataagcaccaaaatcaacctatgcccatacacagtagaggactaagccactacatatggtaatcaaatgacaagttaggaaactttgcctt |
829 |
Q |
| |
|
| ||||| || ||||| | | |||||||||||||||||| || ||| ||||| || || ||||||||||||| ||||||||||| ||||||||| |
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|
| T |
27889064 |
-aagaaaaggaaaacaccagagttaacctatgcccatacacaataaagggctaagtcatcacctatggtaatcaaagatcaagttaggaagctttgcctt |
27889162 |
T |
|
| Q |
830 |
taaccatc-aaacgagagaagcttaacactgtcaataagttgtaaagt-gaggccggtttatctcaaaaca-tatgccattttttgtccttccaaataac |
926 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||| || | ||| ||||||||||||||| |||| | | ||| | ||||||| |||||||||||| |
|
|
| T |
27889163 |
taaccatcaaaacgagagaaacttaacactaccaataagctgaagagtggaggccggtttatctgaaaaaattctgcta-tttttgttcttccaaataac |
27889261 |
T |
|
| Q |
927 |
ccaaatgc-agtgcaccaaattattacaagccaaacacggtgagatt |
972 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
27889262 |
ccaaatgcaagtgtaccaaatcattacaagccaaacacggtgagatt |
27889308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 754 - 815
Target Start/End: Complemental strand, 49185811 - 49185750
Alignment:
| Q |
754 |
aacctatgcccatacacagtagaggactaagccactacatatggtaatcaaatgacaagtta |
815 |
Q |
| |
|
|||||||||||||||| | || ||| |||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
49185811 |
aacctatgcccatacataataaagggttaagccaccacatatgataattaaatgacaagtta |
49185750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 717 - 935
Target Start/End: Complemental strand, 14557309 - 14557091
Alignment:
| Q |
717 |
acatagtacaaaggatgaaaaaataagcaccaaaatcaacctatgcccatacacagtagaggactaagccactacatatggtaatcaaatgacaagttag |
816 |
Q |
| |
|
|||||||||||| |||||||| || ||||| ||| ||| ||||| ||||||||||| ||| | |||||| || ||||||||||| | |||||||||| |
|
|
| T |
14557309 |
acatagtacaaa--atgaaaaaggaaacaccagaattaacttatgctcatacacagtaaagggttcagccacaacctatggtaatcagaggacaagttag |
14557212 |
T |
|
| Q |
817 |
gaaactttgcctttaacca-tcaaacgagagaagcttaacactgtcaataagttgtaaagtg-aggccggtttatctcaaaaca-tatgccattttttgt |
913 |
Q |
| |
|
| | ||||||||||||||| | ||| |||||||||||||||||||||||||| || | |||| |||||| |||| || |||| | |||| | ||||| | |
|
|
| T |
14557211 |
ggatctttgcctttaaccactaaaatgagagaagcttaacactgtcaataagctgaagagtgaaggccgatttagctgaaaaaattatgtta-tttttat |
14557113 |
T |
|
| Q |
914 |
ccttccaaataacccaaatgca |
935 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
14557112 |
ccttccaaataatccaaatgca |
14557091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 630 - 687
Target Start/End: Complemental strand, 14569328 - 14569271
Alignment:
| Q |
630 |
aagaaactaaaatggattatattaaacttcccaagcacaaagagtgctaagggatcac |
687 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
14569328 |
aagaaactaaaatgaattatattaaacttcccaagcacaaggagtgctaaaggatcac |
14569271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 630 - 974
Target Start/End: Complemental strand, 10463160 - 10462813
Alignment:
| Q |
630 |
aagaaactaaaatggattatattaaacttcccaagcacaaagagtgctaagggatcaccaaaaatttacaaaagcgta------agaacataaacatagt |
723 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||| |||||| | ||||||| || | |||||||| | ||| |
|
|
| T |
10463160 |
aagaaactaaaatgaattatattaaacttcccaagcacaaggagtgctaaaggaaaaccaaacggtcacaaaagtataacaacgacaacataaatagagt |
10463061 |
T |
|
| Q |
724 |
acaaaggatgaaaaaataagcaccaaaatcaacctatgcccatacacagtagaggactaagccactacatatggtaatcaaatgacaagttaggaaactt |
823 |
Q |
| |
|
||| | ||||||| || || || | | |||||||| |||||||| || ||| |||| || ||||||||||||| ||||||||||||| || |
|
|
| T |
10463060 |
gtaaacg--gaaaaaagaatcatcagagttaacctatgttcatacacaataaagg----gtccaccacctatggtaatcaaaggacaagttaggaatatt |
10462967 |
T |
|
| Q |
824 |
tgcctttaaccatc-aaacgagagaagcttaacactgtcaataagttgtaaagt-gaggccggtttatctcaaaaca-tatgccattttttgtccttcca |
920 |
Q |
| |
|
| |||||||||||| ||| |||||||| ||||||| |||||||| || | ||| |||||||||||||| |||| | |||| ||| |||||||||| |
|
|
| T |
10462966 |
ttcctttaaccatcaaaataagagaagcctaacactatcaataagctgaagagtataggccggtttatctgaaaaaattatg-ttgtttatgtccttcca |
10462868 |
T |
|
| Q |
921 |
aataacccaaatgc-agtgcaccaaattattacaagccaaacacggtgagatttg |
974 |
Q |
| |
|
||||| |||||||| || ||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
10462867 |
aataatccaaatgcaagcgcaacaaatcattacaagccaaacatagtgagatttg |
10462813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 751 - 974
Target Start/End: Complemental strand, 1598639 - 1598413
Alignment:
| Q |
751 |
atcaacctatgcccatacacagtagaggactaagccactacatatggtaatcaaatgacaagttaggaaactttgcctttaaccatc-aaacgagagaag |
849 |
Q |
| |
|
||||||| ||||||||||||| || || ||||||||| | ||| |||||||| || |||||||||| |||||| |||||||| | ||||||||| || |
|
|
| T |
1598639 |
atcaaccaatgcccatacacaataaagagctaagccaccatctataataatcaaaggataagttaggaatctttgcatttaaccaccaaaacgagaggag |
1598540 |
T |
|
| Q |
850 |
cttaacactgtcaataagttgtaaagt-gaggccggtttatctcaaaacatatgccattttttgtccttccaaataacccaaatgc-agtgcaccaaatt |
947 |
Q |
| |
|
|||||||| |||||||| |||| || || || ||||||||| ||| | || ||| |||| |||||||||| |||||| | || ||||||||| |
|
|
| T |
1598539 |
tttaacactatcaataagatgtagggtagaagctggtttatctgtaaaaaaattgttgtttctgtcattccaaataatccaaatacaagcgcaccaaatc |
1598440 |
T |
|
| Q |
948 |
attacaagccaaacacggtgagatttg |
974 |
Q |
| |
|
||||||||||| ||||| ||||||||| |
|
|
| T |
1598439 |
attacaagccacacacgctgagatttg |
1598413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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