View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551-Insertion-3 (Length: 576)
Name: NF4551-Insertion-3
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 558; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 576
Target Start/End: Complemental strand, 41740368 - 41739799
Alignment:
| Q |
7 |
aaaaagaatatgtggctagaaacacaaacatttttcctaaacaagtaacaacattaatcgttttgcagcagaagcattgaagaataaagatggcaaaaaa |
106 |
Q |
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| T |
41740368 |
aaaaagaacatgtggctagaaacacaaacatttttcctaaacaagtaacaacattaatcgttttgcagcagaagcattgaagaataaagatggcaaaaaa |
41740269 |
T |
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| Q |
107 |
catgtgcaacagtgaaggacacttagatgacacaaatttcagcaagccaatgccatggataggagtctacatagcaacagcatcacttttatctcttatt |
206 |
Q |
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| T |
41740268 |
catgtgcaacagtgaaggacacttagatgacacaaatttcagcaagccaatgccatggataggagtctacatagcaacagcatcacttttatctcttatt |
41740169 |
T |
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| Q |
207 |
tcaatgtctgcagatctcattaaaggcatcaaaacccgaaaactatgattcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctg |
306 |
Q |
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| T |
41740168 |
tcaatgtctgcagatctcattaaaggcatcaaaacccgaaaactatggttcccttgcaaatacttttgtctcaatgcaacttccttaaccataatcgctg |
41740069 |
T |
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| Q |
307 |
tttccgtcaaactctccgttgatctcaacactcctatgcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggc |
406 |
Q |
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| T |
41740068 |
tttccgtcaaactctccgttgatctcaacactcctatgcctcaccgtcatgatcagctagcaaagctagctagcagtgctatcatttgcactatcatggc |
41739969 |
T |
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| Q |
407 |
taattctatgccttctcttggtgtgacgcagaacagtgaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgt |
506 |
Q |
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| T |
41739968 |
taattctatgccttctcttggtgtgacgcagaacagtgaaaccatgatgaatgttttggctatggctattttagtgattactatgattgttaatatttgt |
41739869 |
T |
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| Q |
507 |
attcaatttggaactggggttatctatgagttttggattgaacatggtgttattatgtttcttatggtta |
576 |
Q |
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| T |
41739868 |
attcaatttggaactggggttatctatgagttttggattgaacacggtgttattatgtttcttatggtta |
41739799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 76 - 576
Target Start/End: Original strand, 41745461 - 41745961
Alignment:
| Q |
76 |
agaagcattgaagaataaagatggcaaaaaacatgtgcaacagtgaaggacacttagatgacacaaatttcagcaagccaatgccatggataggagtcta |
175 |
Q |
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| T |
41745461 |
agaagcagtgaagaatgaggatgacaaaaaatatgtgcaacagtgaaggacagttagacgatgcacaattcagcaaaccaatgccatggattggaatcta |
41745560 |
T |
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| Q |
176 |
catagcaacagcatcacttttatctcttatttcaatgtctgcagatctcattaaaggcatcaaaacccgaaaactatgattcccttgcaaatacttttgt |
275 |
Q |
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| T |
41745561 |
catagcaacagcatcacttttatgtctcatttctatgtctgcagacctcattaaaggcatcaaaacccgcaaactatggttcccttgcaaatacttttgt |
41745660 |
T |
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| Q |
276 |
ctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctcaacactcctatgcctcaccgtcatgatcagctagcaaagctag |
375 |
Q |
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| T |
41745661 |
ctcaacgcaacttccttaaccataatcgctgtttctttaaaactctcggttgatctcaacactcctatgcctcaccgtcatgatcagctagcgaaactag |
41745760 |
T |
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| Q |
376 |
ctagcagtgctatcatttgcactatcatggctaattctatgccttctcttggtgtgacgcagaacagtgaaaccatgatgaatgttttggctatggctat |
475 |
Q |
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| T |
41745761 |
ctagcagtgctttaatctgcacaatcatggctaattccatgccatctcttggtgtcacaccgaacaatgaaaccatgttgaatgttttggctatggctat |
41745860 |
T |
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| Q |
476 |
tttagtgattactatgattgttaatatttgtattcaatttggaactggggttatctatgagttttggattgaacatggtgttattatgtttcttatggtt |
575 |
Q |
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| T |
41745861 |
tttagtagttactatgattgttaatatctgtattcaatttggaactggggttatctatgagttttggattgaacatggtgttattatgtttcttatggtt |
41745960 |
T |
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| Q |
576 |
a |
576 |
Q |
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| T |
41745961 |
a |
41745961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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