View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551-Insertion-4 (Length: 534)
Name: NF4551-Insertion-4
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 32 - 517
Target Start/End: Complemental strand, 14064735 - 14064251
Alignment:
| Q |
32 |
accatacactaattcacattagcacaaactacttcaagtaagattattatgacaagaaacactctaagtcctccactttctaataataaccactcactct |
131 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
14064735 |
accatacactatttcacattagcacaaactactacaagtaagattagtatgacaaggaacacaataagtcctccactttcaaataataaccactcactct |
14064636 |
T |
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| Q |
132 |
ccatgtatggttagccataatctgatctgacaaatttcctatatttatgcattcttccctttcttgtataaatcatttagaacaattagcaatgctcttt |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
14064635 |
ccatgtatggttagccataatctgatctgacaaatttcctatatttatgtattcttctctttcttgtataaatcatttgtaacaattagcaatgctcttt |
14064536 |
T |
|
| Q |
232 |
taattccatacatgaaagaaagcgatgatgatgagatacaagaaagatttatacaagagcattgtataaccttatattagtctctcnnnnnnnnnnnnca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14064535 |
taattccatacatgaaagaaagcgatgatgatgagatacaagaaagatttatacaagagcattgtataaccttatattagtctctcaaaaaaaaaa---a |
14064439 |
T |
|
| Q |
332 |
tacattaaattatattataaaatgatgagatacaatgttaaggattaatt--nnnnnnnnnntggtaaggataatatcatgcatatgatgaccaccattt |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| |
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| T |
14064438 |
cacattaaattatattataaaatgatgagatacaatgttaaggattaattcaaaaaaaaaaatggtaaggataatatcatggatatgatgacctccattt |
14064339 |
T |
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| Q |
430 |
atttatgtttacattagctgtaagtaatcctcattcctacgtgggctagtggagcaatgagcttagtgtctcatttcagttcctctag |
517 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14064338 |
atttatgtttatattagctgtaagtaatcctcattcctacatgggctagtggagcaatgagcttagtgtctcatttcagttcctctag |
14064251 |
T |
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