View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551-Insertion-6 (Length: 251)
Name: NF4551-Insertion-6
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551-Insertion-6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 31127387 - 31127145
Alignment:
| Q |
8 |
aaaagaaccaagtgagtgcagttgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaact |
107 |
Q |
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| T |
31127387 |
aaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaact |
31127288 |
T |
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| Q |
108 |
taaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttc |
207 |
Q |
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| T |
31127287 |
taaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggc-gagtcctcttacttc |
31127189 |
T |
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| Q |
208 |
agcagcagcttcttttaaccgtcgctctgatccaacatttaata |
251 |
Q |
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| T |
31127188 |
agcagcagcttcttttaaccgtcgctctgatccaacatttaata |
31127145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 31078069 - 31077844
Alignment:
| Q |
8 |
aaaagaaccaagtgagtgcagttgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctgaact |
107 |
Q |
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| T |
31078069 |
aaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaact |
31077970 |
T |
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| Q |
108 |
taaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctcttacttc |
207 |
Q |
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| T |
31077969 |
taaaaaccgcgataaaagatcaactgattccaaagttgctttttctttaagctcttttttcttttccctaacgattcttgtagc-aagtcctcttacttc |
31077871 |
T |
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| Q |
208 |
agcagcagcttcttttaaccgtcgctc |
234 |
Q |
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| T |
31077870 |
agcgacggcttctttcaatcgtcgctc |
31077844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 31132099 - 31131870
Alignment:
| Q |
4 |
aacaaaaagaaccaagtgagtgcagttgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaacaaaagattcatctgaatgacctg |
103 |
Q |
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| T |
31132099 |
aacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccag |
31132000 |
T |
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| Q |
104 |
aacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcctttttcttttccctaacgattcttgtggctgagtcctctta |
203 |
Q |
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| T |
31131999 |
aacttaaaaatcgcgacaaaatatccaccgattccaaggtttccttttctttaagctcttttttcttttccctaacaatttttgtggc-gagccccctta |
31131901 |
T |
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| Q |
204 |
cttcagcagcagcttcttttaaccgtcgctc |
234 |
Q |
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| T |
31131900 |
cttcagcgacagcttctttcaaccgtcgctc |
31131870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 251
Target Start/End: Complemental strand, 31129011 - 31128825
Alignment:
| Q |
64 |
attacaatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctcct |
163 |
Q |
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| T |
31129011 |
attacaatatcaactgcaaaagattcttctgaatgtgcgtaactcaagcgtcgtggtagaataaccaatgattccaacactgatttttctacaaactctt |
31128912 |
T |
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| Q |
164 |
ttttcttttccctaacgattcttgtggctgagtcctcttacttcagcagcagcttcttttaaccgtcgctctgatccaacatttaata |
251 |
Q |
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| T |
31128911 |
ttttcttttccctaacgattcttgtggc-gagtcctcttacttcaacgacggcttcttttagccgtttcttggatccaacatttaata |
31128825 |
T |
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