View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4551_high_1 (Length: 929)
Name: NF4551_high_1
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_high_1 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0328 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 11680916 - 11681253
Alignment:
| Q |
19 |
ttttgaaccaatggagaggagactgcccttcaccttttcctgcactagccggttactgccttattgtgggcgaaatgattctcttagttaagggtcaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11680916 |
ttttgaaccaatggagaggagactgcccttcaccttttcctgcactagccggttactgccttattgtgggcgaaatgattctcttagttaagggtcaatc |
11681015 |
T |
|
| Q |
119 |
tcatcacaccactgaactcattgattcaaactgagtatttgttggatggtgtccttaaaagaaattggaaaaaggctattggcttatttcgcatgcggct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11681016 |
tcatcacaccactgaactcattgattcaaactgagtatttgttggatggtgtccttaaaagaaattggaaaaaggctattggcttatttggcatgcggct |
11681115 |
T |
|
| Q |
219 |
atatgaaaggcgcgaaatggaatgatttttcttatgataaggggatagatgttgaggaattgatggaagaggtcaaagtcctttcctggaaatggagttg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681116 |
atatgaaaggcgcgaaatggaatgattttt-ttatgataaggggatagatgttgaggaattgatggaagaggtcaaagtcctttcctggaaatggagttg |
11681214 |
T |
|
| Q |
319 |
tctaggttgaagtcttctctatgtatgttctacgagatg |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681215 |
tctaggttgaagtcttctctatgtatgttctacgagatg |
11681253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 368 - 694
Target Start/End: Original strand, 11681305 - 11681633
Alignment:
| Q |
368 |
agtcgtagctttgtgttttggttcagctgtctctgaagggtgcatggaccttttgctgagatgctgcggtttgtgctggttttgctggggttttcactgt |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
11681305 |
agtcgtagctttgtgttttggttcagctgtctctgaagggtgcatggaccttttgctgtgatgctgcggtttgtgctagttttgctgggtttttgactgt |
11681404 |
T |
|
| Q |
468 |
ttgtctttgatgttttagcagtttaggcttgctgttctgttttggtgtgctggtcc--gtttcttcgcaccagttttaccgctgttgttgccgagtcttt |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681405 |
ttgtctttgatgttttagcagtttaggcttgctgttctgttttggtgtgctggcccctgtttcttcgcaccagttttaccgctgttgttgccgagtcttt |
11681504 |
T |
|
| Q |
566 |
ttaacttgttttggccttcttgtactatttaattcggccattccatgtactgccttgtgcgggtttttgagcgttaataaacttgagcaatgatattttg |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
11681505 |
ttaacttgttttggccttcttgtactatttaattcggccattctatgtactgccttgtgcgggtttttgagcgttaataaacttgagcaatggtattttg |
11681604 |
T |
|
| Q |
666 |
aataaccatattatttgatacacctttta |
694 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
11681605 |
aataaccatattatttgatacacttttta |
11681633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 847 - 912
Target Start/End: Original strand, 11681650 - 11681715
Alignment:
| Q |
847 |
tttctcttttaattggtcaaaaacaatgagattaatgaatgttatggtagaagctgaattgttcac |
912 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11681650 |
tttctcttttaattggtcaaaaacaatgagattaatgaatgttatggtagaagctgaattgttcac |
11681715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 696 - 800
Target Start/End: Original strand, 408564 - 408668
Alignment:
| Q |
696 |
ttgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgt |
795 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
408564 |
ttgcctgtttggtatagtggtgggagcataaataccacttcccaatgctaatctaccatgatttttgggaagcttacaattgtagcttttgccaaaacgt |
408663 |
T |
|
| Q |
796 |
gggta |
800 |
Q |
| |
|
||||| |
|
|
| T |
408664 |
gggta |
408668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 701 - 811
Target Start/End: Complemental strand, 34785102 - 34784992
Alignment:
| Q |
701 |
tgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtgggta |
800 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
34785102 |
tgtttggtataatggtgggagcataaataccacttcccaatgctaatctaccgtgatttttgagaagcttaaaattgtagcttttgtcaaaacgtgggta |
34785003 |
T |
|
| Q |
801 |
cagatctgatc |
811 |
Q |
| |
|
||| ||||||| |
|
|
| T |
34785002 |
caggtctgatc |
34784992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 692 - 811
Target Start/End: Original strand, 23667547 - 23667666
Alignment:
| Q |
692 |
ttaattgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaa |
791 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
23667547 |
ttaagtgcctgtttggtataatggtgggagcataaataccacttcctaatgctaatttaccgtgatttttgggaagcttaaaagtgtagcttttgccaaa |
23667646 |
T |
|
| Q |
792 |
acgtgggtacagatctgatc |
811 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
23667647 |
acgtggatacaggtctgatc |
23667666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 697 - 811
Target Start/End: Original strand, 7473 - 7587
Alignment:
| Q |
697 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
796 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||||||||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
7473 |
tgcctgtttggtatagtggcgggagcataaataccactttccaatgctaatttaccgtgatttttgagaagcttaaaattgtagcttttaccaaaacgtg |
7572 |
T |
|
| Q |
797 |
ggtacagatctgatc |
811 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
7573 |
ggtacaagtctgatc |
7587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 697 - 811
Target Start/End: Complemental strand, 21733023 - 21732909
Alignment:
| Q |
697 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
796 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||| | ||||||| ||| ||||||||| ||||||||||||||||||| |
|
|
| T |
21733023 |
tgcctgtttggtatagtggtgggagtataaataccacttcccaatgctaataaaccgtaatttttgagaaacttaaaattgtagcttttgccaaaacgtg |
21732924 |
T |
|
| Q |
797 |
ggtacagatctgatc |
811 |
Q |
| |
|
||||| | ||||||| |
|
|
| T |
21732923 |
ggtactggtctgatc |
21732909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 697 - 796
Target Start/End: Original strand, 51268741 - 51268840
Alignment:
| Q |
697 |
tgcctgtttggtatagtggtcggagcataaataccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtg |
796 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||| |||| ||||| ||||||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
51268741 |
tgcctgtttggtattgtggtgggagcataaataccacttctcaatgctaacctaccgtgatttttgagaagcttacaattgtagcttttgccaaaacgtg |
51268840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 728 - 811
Target Start/End: Complemental strand, 2094520 - 2094438
Alignment:
| Q |
728 |
taccacttcccaatactaatctaccatgatttttgggaagcttaaaattatagcttttgccaaaacgtgggtacagatctgatc |
811 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| | ||| |||||||||| ||||||| |
|
|
| T |
2094520 |
taccacttcccaatactaatctaccgtgatttttgagaagcttaaaattgtagcttttagc-aaatgtgggtacaggtctgatc |
2094438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University