View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551_low_10 (Length: 258)
Name: NF4551_low_10
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 49170806 - 49171048
Alignment:
| Q |
1 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttgtgaaaaggggtttgtgtcgcaagaatatag |
100 |
Q |
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| T |
49170806 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaatataa |
49170905 |
T |
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| Q |
101 |
taagggcttggttgtctctaaaactttgttgtttgcaaatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatg-tttttcttttctg |
199 |
Q |
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| T |
49170906 |
taagggcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatgttttttcttttctg |
49171005 |
T |
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| Q |
200 |
gtctaacaataggagtttgacgtgagttatgtagagagggtag |
242 |
Q |
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| T |
49171006 |
gtctaacaagaggagtttgacgtgagttatgtagagagggtag |
49171048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 8421308 - 8421067
Alignment:
| Q |
1 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttgtgaaaaggggtttgtgtcgcaagaatatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
8421308 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttatgaaaaggggtttgtgtcgcaagaattgag |
8421209 |
T |
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| Q |
101 |
taagggcttggttgtctctaaaactttgttgtttgcaaatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatgtttttcttttctgg |
200 |
Q |
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| T |
8421208 |
taaggtcttggttgtctctaaaactttgttgtttgcagatagtaaagaaaggaccacatgccaaagagtataatcacaaatttatgtttttcttttcagg |
8421109 |
T |
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| Q |
201 |
tctaacaataggagtttgacgtgagttatgtagagagggtag |
242 |
Q |
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| T |
8421108 |
tctaacaagaggagtttgacgtgagttatgtagagagggtag |
8421067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 36732750 - 36732895
Alignment:
| Q |
1 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaaggagtggcttgattgacttgtgaaaaggggtttgtgtcgcaagaatatag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| |||||| ||||||||||| |||||| |
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| T |
36732750 |
aggacatagagtataccttagacttccatgaattttaaaaagagaagaaatgagtggcttgatagacttatgataagggg-ctgtgtcgcaaggatatag |
36732848 |
T |
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| Q |
101 |
taa--gggcttggttgtctctaaaactttgttgtttgcaaatagtaa |
145 |
Q |
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||| |||| ||||||| |||| |||||||||||||| | ||||||| |
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| T |
36732849 |
taaaggggcatggttgtttctagaactttgttgtttgtagatagtaa |
36732895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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