View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551_low_13 (Length: 239)
Name: NF4551_low_13
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_low_13 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 16619556 - 16619668
Alignment:
| Q |
18 |
acatacggcaatttgagttgcggacataagataatggatatttcgtatattttaaaccatatctatagcatgatcttaagcattttcttatgggttatag |
117 |
Q |
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| T |
16619556 |
acatacggcaatttgagttgcggacattagttaatggatatttcgtatattttaaaccatatctatagcatgatcttaagcattttcttatgggttatag |
16619655 |
T |
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| Q |
118 |
ttaatcattgtca |
130 |
Q |
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| T |
16619656 |
ttaatcattgtca |
16619668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 16619844 - 16619954
Alignment:
| Q |
125 |
ttgtcataccaaatgacatcgtgacttgttcaagttaacgtcatatctagggatgacaattagacccaggtccgatggacatccgctaaaatattcgtta |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
16619844 |
ttgtcataccaaatgacatcgtgacttgttcaagttaacgtcatatctagggat----attagacccagatccgatggacatccgctaaaatactcgtta |
16619939 |
T |
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| Q |
225 |
tggatagggtaaaac |
239 |
Q |
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| T |
16619940 |
tggatagggtaaaac |
16619954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 16616013 - 16616114
Alignment:
| Q |
18 |
acatacggcaatttgagttgcggacataagataatggatatttcgtatattttaaaccatatctatagcatgatc-ttaagcattttcttatgggttata |
116 |
Q |
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| T |
16616013 |
acatacggcaatttgagttgcggatattggttaatagat---tcgtatattttaaaccatatctatagcatgatctttatacattttcctatgggttata |
16616109 |
T |
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| Q |
117 |
gttaa |
121 |
Q |
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|||| |
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| T |
16616110 |
attaa |
16616114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 221531 - 221573
Alignment:
| Q |
175 |
ggatgacaattagacccaggtccgatggacatccgctaaaata |
217 |
Q |
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| T |
221531 |
ggatgacaattggacccaggtccgatgggcatccgcaaaaata |
221573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 36073630 - 36073676
Alignment:
| Q |
169 |
atctagggatgacaattagacccaggtccgatggacatccgctaaaa |
215 |
Q |
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| T |
36073630 |
atctagggatggcaattatacccaggtccgatggacacccgcaaaaa |
36073676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 34151931 - 34152004
Alignment:
| Q |
166 |
catatctagggatgacaattagacccaggtccgatggacatccgc-taaaatattcgttatggatagggtaaaa |
238 |
Q |
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| T |
34151931 |
catatgtagggatgacaattggaccaagatcctatggacatccgcaaaaaatacccgttatgggtagggtaaaa |
34152004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 34175193 - 34175120
Alignment:
| Q |
166 |
catatctagggatgacaattagacccaggtccgatggacatccgc-taaaatattcgttatggatagggtaaaa |
238 |
Q |
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| T |
34175193 |
catatgtagggatgacaattggaccaagatcctatggacatccgcaaaaaatacccgttatgggtagggtaaaa |
34175120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 36073239 - 36073171
Alignment:
| Q |
172 |
tagggatgacaattagacccaggtccgatggacatccgc-taaaatattcgttatggatagggtaaaac |
239 |
Q |
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| T |
36073239 |
tagggatggcaattagacccaggtctgatgggcatccgcaaaaaatacccgtaatgggtagggtaaaac |
36073171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 14595847 - 14595805
Alignment:
| Q |
175 |
ggatgacaattagacccaggtccgatggacatccgctaaaata |
217 |
Q |
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| T |
14595847 |
ggatgacaattggacccaggtccgatgggcatccgcaaaaata |
14595805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 22306277 - 22306321
Alignment:
| Q |
172 |
tagggatgacaattagacccaggtccgatggacatccgctaaaat |
216 |
Q |
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| T |
22306277 |
tagggatgacaattagacccaggcccgatgggtatccgcaaaaat |
22306321 |
T |
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