View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551_low_15 (Length: 226)
Name: NF4551_low_15
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 26958973 - 26958777
Alignment:
| Q |
19 |
aatgggggcatcagcatcatcagtttggtataatttgagagtggctcatccaacaaaacaagtgccaatattagactatgatttggctcttttgtttcag |
118 |
Q |
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| T |
26958973 |
aatgggggcatcagcatcatcagtttggtataatttgagagtggctcatccaacaaaacaagtgccaatattagactatgatttggctcttttgtttcag |
26958874 |
T |
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| Q |
119 |
ccaatgcttatgcttgggattactgttggtgttactctcagtgttgttttccctttttggcttatcactgtcctcattatcattctcttcacaggtt |
215 |
Q |
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| T |
26958873 |
ccaatgcttatgcttgggattactgttggtgttactctcagtgttgttttccctttttggcttatcactgtcctcattatcattctcttcataggtt |
26958777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 41775393 - 41775544
Alignment:
| Q |
64 |
tcatccaacaaaacaagtgccaatattagactatgatttggctcttttgtttcagccaatgcttatgcttgggattactgttggtgttactctcagtgtt |
163 |
Q |
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| T |
41775393 |
tcatccaacaaaagatgttccaatattggattatgatctagctcttctttttcaacctatgcttatgcttggtatcactgttggtgttgctcttagtgtt |
41775492 |
T |
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| Q |
164 |
gttttccctttttggcttatcactgtcctcattatcattctcttcacaggtt |
215 |
Q |
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| T |
41775493 |
gttttcccttactggctcatcactgtccttatcattattctcttcataggtt |
41775544 |
T |
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