View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551_low_7 (Length: 283)
Name: NF4551_low_7
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 64 - 265
Target Start/End: Complemental strand, 4287567 - 4287366
Alignment:
| Q |
64 |
agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactaatcttctccaaatatttccggaaaacaatttaatc |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
4287567 |
agtagtagttaagtaaaaaatattgttactctctttttctattatctttaacaatgtagaaactattcttctccaaatatttccggaaaacaattcaatc |
4287468 |
T |
|
| Q |
164 |
gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4287467 |
gttaaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgatcaagtatatatct |
4287368 |
T |
|
| Q |
264 |
tg |
265 |
Q |
| |
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|| |
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|
| T |
4287367 |
tg |
4287366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 19990314 - 19990230
Alignment:
| Q |
166 |
taaacatatagatttgagatttcattttcttagagacctcgctaaagatggagtgagtgagctagttcatttcaacacaaatgat |
250 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||||||| ||| ||||||||| |
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| T |
19990314 |
taaacatattgatttgagatttcattttcttagtgacctcattaaagatggaatgattgatctagttcattacaaaacaaatgat |
19990230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 38572462 - 38572495
Alignment:
| Q |
28 |
cacattagtactcattattctaaatatcctatca |
61 |
Q |
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||||||||||||||||||||||||||| |||||| |
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|
| T |
38572462 |
cacattagtactcattattctaaatatactatca |
38572495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 36050554 - 36050519
Alignment:
| Q |
26 |
accacattagtactcattattctaaatatcctatca |
61 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
36050554 |
accacattagtactcattattctaaatatcctatca |
36050519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 36053813 - 36053778
Alignment:
| Q |
26 |
accacattagtactcattattctaaatatcctatca |
61 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
36053813 |
accacattagtactcattattctaaatatcctatca |
36053778 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 30911954 - 30911921
Alignment:
| Q |
28 |
cacattagtactcattattctaaatatcctatca |
61 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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|
| T |
30911954 |
cacattagtactcattattctaagtatcctatca |
30911921 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 55211934 - 55211970
Alignment:
| Q |
27 |
ccacattagtactcattattctaaatatcctatcagt |
63 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||| |
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| T |
55211934 |
ccacattagtgctccttattctaaatatcctatcagt |
55211970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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