View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4551_low_8 (Length: 279)

Name: NF4551_low_8
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4551_low_8
NF4551_low_8
[»] chr5 (5 HSPs)
chr5 (176-270)||(16620133-16620227)
chr5 (1-88)||(16619961-16620050)
chr5 (13-73)||(3049392-3049452)
chr5 (12-73)||(30775216-30775277)
chr5 (16-56)||(19254126-19254166)
[»] chr1 (3 HSPs)
chr1 (12-70)||(48985555-48985613)
chr1 (12-73)||(35738646-35738707)
chr1 (173-225)||(958609-958661)
[»] chr7 (9 HSPs)
chr7 (12-73)||(26299798-26299859)
chr7 (187-246)||(2960153-2960212)
chr7 (12-73)||(9224048-9224109)
chr7 (12-73)||(12499242-12499303)
chr7 (12-73)||(16562317-16562378)
chr7 (12-73)||(16603284-16603345)
chr7 (12-73)||(34152031-34152092)
chr7 (12-73)||(34175032-34175093)
chr7 (173-225)||(30391842-30391894)
[»] chr4 (2 HSPs)
chr4 (12-73)||(52014229-52014290)
chr4 (16-56)||(22248259-22248299)
[»] chr3 (4 HSPs)
chr3 (188-257)||(54444242-54444311)
chr3 (12-73)||(10084901-10084962)
chr3 (12-73)||(32995639-32995700)
chr3 (12-56)||(35732639-35732683)
[»] chr2 (3 HSPs)
chr2 (12-73)||(35049028-35049089)
chr2 (12-72)||(8754289-8754349)
chr2 (34-71)||(2657207-2657244)
[»] chr6 (1 HSPs)
chr6 (183-217)||(33959963-33959997)
[»] chr8 (1 HSPs)
chr8 (12-73)||(38551974-38552035)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 176 - 270
Target Start/End: Original strand, 16620133 - 16620227
Alignment:
Q  176 atttatgtatttaactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcctgctgcgttgaactttaatctctgc 270  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  16620133 atttatttatttaactatttaagtctatacctaaacctaaaacaacttaatacagtaaccctacccctcctgctgcgttgaactttaatctctgc 16620227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16619961 - 16620050
Alignment:
Q  1 ttaataggtacgtatgggtaattacccgtagatttgaatgggtatggacacgg--atatggtcattgtactaccctaccctccaaccagc 88  Q
    |||||||||||||||||||||||| |||||||| | |||||||||| ||||||  |||||| ||||||||||| | ||||||||||||||    
T  16619961 ttaataggtacgtatgggtaattatccgtagatattaatgggtatgaacacggatatatgggcattgtactactcaaccctccaaccagc 16620050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 3049392 - 3049452
Alignment:
Q  13 tatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||| || ||||||||||    
T  3049392 tatgggtaattaccagtaaatttgaatgggtatggacacggatatggacactgtactaccc 3049452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 30775277 - 30775216
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||| ||||| ||||| || ||||||||||    
T  30775277 gtatgggtaattacccgcaaatttatatgggtatgggcacgggtatggacactgtactaccc 30775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 19254126 - 19254166
Alignment:
Q  16 gggtaattacccgtagatttgaatgggtatggacacggata 56  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  19254126 gggtaattacccgcaaattttaatgggtatggacacggata 19254166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 48985613 - 48985555
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtacta 70  Q
    ||||||||||||||||| | ||||||||| |||||||||||| ||||| || |||||||    
T  48985613 gtatgggtaattacccgcatatttgaatgtgtatggacacggctatgggcactgtacta 48985555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 35738646 - 35738707
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||| ||||| ||||| || ||||||||||    
T  35738646 gtatgggtaattacccgcaaatttatatgggtatgggcacgggtatgggcaatgtactaccc 35738707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 958609 - 958661
Alignment:
Q  173 ttaatttatgtatttaactatttaagtctatacctaaacctaaaacaatttaa 225  Q
    ||||||||| |||||||||||||||  |||  |||||||||||||||| ||||    
T  958609 ttaatttatttatttaactatttaaacctaaccctaaacctaaaacaacttaa 958661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 26299859 - 26299798
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||| |||||||||| ||||| ||||| || ||||||||||    
T  26299859 gtatgggtaattacccgcaaatttgtatgggtatgggcacgggtatgggcactgtactaccc 26299798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 2960212 - 2960153
Alignment:
Q  187 taactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcct 246  Q
    |||||||||||| ||| ||||||||||||||||| |||| | || |||| ||||||||||    
T  2960212 taactatttaagcctaaacctaaacctaaaacaacttaatatagtaaccttacccctcct 2960153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 9224109 - 9224048
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    |||||| |||||||||| | ||||  |||||||||| ||||||||||| || ||||||||||    
T  9224109 gtatggataattacccgcaaatttatatgggtatgggcacggatatgggcactgtactaccc 9224048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 12499242 - 12499303
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||| |||||||||| ||||| ||||| || | ||||||||    
T  12499242 gtatgggtaattacccgcaaatttgtatgggtatgggcacgggtatggacactatactaccc 12499303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 16562378 - 16562317
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||||||||| ||||  || ||||||||||    
T  16562378 gtatgggtaattacccgcaaatttttatgggtatggacacgggtatgaacactgtactaccc 16562317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 16603284 - 16603345
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||||||||| ||||  || ||||||||||    
T  16603284 gtatgggtaattacccgcaaatttttatgggtatggacacgggtatgaacactgtactaccc 16603345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 34152031 - 34152092
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||| | | ||||  |||||||||| ||||| ||||| |||||||||||||    
T  34152031 gtatgggtaattacctgcaaatttatatgggtatgggcacgggtatgggcattgtactaccc 34152092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 34175093 - 34175032
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||| | | ||||  |||||||||| ||||| ||||| |||||||||||||    
T  34175093 gtatgggtaattacctgcaaatttatatgggtatgggcacgggtatgggcattgtactaccc 34175032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 30391894 - 30391842
Alignment:
Q  173 ttaatttatgtatttaactatttaagtctatacctaaacctaaaacaatttaa 225  Q
    ||||||||| |||||||| | |||||||||  |||||||||||||||| ||||    
T  30391894 ttaatttatttatttaacgacttaagtctaaccctaaacctaaaacaacttaa 30391842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 52014290 - 52014229
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    |||||| |||||||||||| ||||||||||| |||| |||| |||||| || ||||||||||    
T  52014290 gtatggataattacccgtaaatttgaatgggcatgggcacgaatatgggcactgtactaccc 52014229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 22248299 - 22248259
Alignment:
Q  16 gggtaattacccgtagatttgaatgggtatggacacggata 56  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  22248299 gggtaattacccgcaaattttaatgggtatggacacggata 22248259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 54444242 - 54444311
Alignment:
Q  188 aactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcctgctgcgttgaa 257  Q
    |||||||||||  || |||||||| |||||||| |||| |||| |||| || ||||||||||||||||||    
T  54444242 aactatttaagcataaacctaaacttaaaacaacttaatacagtaaccttaaccctcctgctgcgttgaa 54444311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 10084901 - 10084962
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||| ||||| ||||| || ||||||||||    
T  10084901 gtatgggtaattacccgcaaatttatatgggtatgggcacgggtatgggcactgtactaccc 10084962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 32995700 - 32995639
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||| |||||||||  ||||| ||||| || ||||||||||    
T  32995700 gtatgggtaattacccgcaaatttgtatgggtatgagcacgggtatgggcactgtactaccc 32995639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 35732683 - 35732639
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggata 56  Q
    ||||||||||||||||||| ||||  ||||| |||||||||||||    
T  35732683 gtatgggtaattacccgtaaatttatatgggcatggacacggata 35732639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 35049089 - 35049028
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||| ||||||||||| || ||||||||||    
T  35049089 gtatgggtaattacccgcaaatttatatgggtatgggcacggatatgggcactgtactaccc 35049028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 8754349 - 8754289
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactacc 72  Q
    |||||| |||||||||||| |||||||||||||||| || || ||||| || |||||||||    
T  8754349 gtatggataattacccgtaaatttgaatgggtatgggcatgggtatgggcactgtactacc 8754289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 2657244 - 2657207
Alignment:
Q  34 ttgaatgggtatggacacggatatggtcattgtactac 71  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2657244 ttgaatgggtatggacacgggtatggacattgtactac 2657207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 33959963 - 33959997
Alignment:
Q  183 tatttaactatttaagtctatacctaaacctaaaa 217  Q
    |||||||||||||||||||| ||||||||||||||    
T  33959963 tatttaactatttaagtctaaacctaaacctaaaa 33959997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 38552035 - 38551974
Alignment:
Q  12 gtatgggtaattacccgtagatttgaatgggtatggacacggatatggtcattgtactaccc 73  Q
    ||||||||||||||||| | ||||  |||||||||| ||||||||| | || ||||||||||    
T  38552035 gtatgggtaattacccgcaaatttatatgggtatgggcacggatatagacactgtactaccc 38551974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University