View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4551_low_9 (Length: 278)
Name: NF4551_low_9
Description: NF4551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4551_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 25372932 - 25373183
Alignment:
| Q |
18 |
agtggttgggtctaaagtgtgttgtacacaaacaaatattaggtgtgcaaaaatttattattattgat-aagttatgaattagaacacacttacttgtgg |
116 |
Q |
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| T |
25372932 |
agtggttgggtctaaagtgtgttgtacacaaacaaatattaggtgtgcaaaaattcattattattgatcaaattatgaattagaacacacttacttgtgg |
25373031 |
T |
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| Q |
117 |
aagccgccagaattaccgtttccagaatcactgtgatgtgagactgggtcttgctttgcatgctcacatactctggtatttgaattttcaatggggcata |
216 |
Q |
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| T |
25373032 |
aagccgccaggattacattttccagaatcactttgatgtgagactgggtcttgctttgcatgttgacatactctggtatttgaattttcaatggggcata |
25373131 |
T |
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| Q |
217 |
ccgcaaacatgctaaccgttagagtgatgacaaagagaacgtaatccctatg |
268 |
Q |
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| T |
25373132 |
ccgcatacaagctaaccgttagagtgatgataaagagaacgtaatccctatg |
25373183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 262
Target Start/End: Original strand, 25373231 - 25373474
Alignment:
| Q |
23 |
ttgggtctaaagtgtgttgtacacaaacaaat-attaggtgtg-caaaaatttattattattgat-aagttatgaa-ttagaacacacttacttgtggaa |
118 |
Q |
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| T |
25373231 |
ttgggtctatagtgtgttgtactcaaaaaaaacattacgtgtaacaaaaattcattattattgatcaagttaagaaattagaacacacttacttgtggaa |
25373330 |
T |
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| Q |
119 |
gccgccagaattaccgtttccagaatcactgtgatgtgagactgggtcttgctttgcatgctcacatactctggtatttgaattttcaatggggcatacc |
218 |
Q |
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| T |
25373331 |
gtcgtcatgattaccattgtcggaatcaatgtcatgtgagactaagtcttactttgcatgctcacatactctagttttttaattttcaatggggcatacc |
25373430 |
T |
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| Q |
219 |
gcaaacatgctaaccgttagagtgatgacaaagagaacgtaatc |
262 |
Q |
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| T |
25373431 |
acggaaaagctaaccgttagagtgacgacaaagagaacataatc |
25373474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 25372729 - 25372889
Alignment:
| Q |
109 |
acttgtggaagccgccagaattaccgtttccagaatcactgtgatgtgagactgggtcttgctttgcatgctcacatactctggtatttgaattttcaat |
208 |
Q |
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| T |
25372729 |
acttgtggaagtcgtcatgattaccgttgccagaatcactgtgatgtgagattacgtcttactttgcatgctcacatactctggtatttgaattttcaat |
25372828 |
T |
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| Q |
209 |
ggggca--taccgcaaacatgctaaccgttagagtgatgacaaagagaacgtaatccctat |
267 |
Q |
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| T |
25372829 |
ggccaatgtaccgcaaacaacctaatcgttaaagtcatgaaaaagagaacataatctctat |
25372889 |
T |
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