View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4552-Insertion-1 (Length: 908)
Name: NF4552-Insertion-1
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 563
Target Start/End: Original strand, 30725191 - 30725759
Alignment:
| Q |
8 |
taaatttatatccgttttgctgcaacaaatatgtaacaatattctcaaccatttagagccttacaatgatgaagaattcactaatgcgtctgggtatgta |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30725191 |
taaatttatacccgttttgctgcaacaaatatgtaacaatattctcaatcatttagagccttacaatgatgaagaattcactaatgcgtctgggtatgta |
30725290 |
T |
|
| Q |
108 |
tgaacttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagttctcgaaggattgcgatgcttgatttaggtt |
207 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30725291 |
tgaacttcttcgtgagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagttctcgaaagattgcgatgcttgatttaggtt |
30725390 |
T |
|
| Q |
208 |
tgctagaggagccattcttttcaattctgaaagatacatgaggcaccttacgtattcacgaagttatcaattatgtgctgcgacagaaacaacattatgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30725391 |
tgctagaggagccattcttttcaattctgaaagatacatgaggcaccttacgaattcaccaagttatcaattatgtgctgcgacagaaacaacattatgg |
30725490 |
T |
|
| Q |
308 |
cagagttatttgggattctatacagtttgcagctgattgtcgaacaaaggtttgtcccatgttgtgactgaaaccgattccggggaagttttgac----- |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30725491 |
cagagttatttgggattctatacagtttgcagctgattgtcgaac-aaggtttgtccaatgttgtgactgaaaccgattccggggaggttttgactatta |
30725589 |
T |
|
| Q |
403 |
---------------ttgctaatcatcgttcgtcgacttgcaattgcaaagatacaaatactctagttaagatgattggttgtgtggagggaacttattc |
487 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30725590 |
tgcagacctgttgtgttcctaatcatcgttggtcgac------ttgcaaagatacaaatactctagttaagatgattggttgtgtggagggaacttattc |
30725683 |
T |
|
| Q |
488 |
ctcaagnnnnnnnntcaagtcgctgacacttttgccaaagagcgtttaaacagcagatgaagatgcatatttttat |
563 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30725684 |
ctcaagaaaaaaaatcaagtcgcagacacttttgccaaagagggtttaaacagcagatgaagatgcatatttttat |
30725759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 555 - 880
Target Start/End: Original strand, 30726188 - 30726510
Alignment:
| Q |
555 |
tatttttattaatgttcccatttttgctattcaacctttgaagctgataatttggatacnnnnnnnnnccaaaggttgttagtttgattcatggcgggtt |
654 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
30726188 |
tatttttattaatgttcccatttttgctattcaacctttgaagctcataatttggatactttttttt-ccaaaggttgttagtttgattcatgg--ggtt |
30726284 |
T |
|
| Q |
655 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaatttagaaaattgataagttcgacctac |
754 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30726285 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaatttagaaaattgataagttcgacctac |
30726384 |
T |
|
| Q |
755 |
aaaattttctcaatgnnnnnnnagaggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatggataataaaaaattgagttgagga |
854 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
30726385 |
aaaattttctcaatgtttttttagtggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatacaaaataaaaaattgagttgagga |
30726484 |
T |
|
| Q |
855 |
gctaattcggaaaacaataaaagcag |
880 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
30726485 |
gctaattcggaaaacaataaaagcag |
30726510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 23675348 - 23675284
Alignment:
| Q |
113 |
ttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagtt |
177 |
Q |
| |
|
||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23675348 |
ttcttcataaggctctaaattgcatgcataacaaaattttctcaatcatttggagcttggaagtt |
23675284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 23859463 - 23859527
Alignment:
| Q |
113 |
ttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagtt |
177 |
Q |
| |
|
||||||||||| || |||||| |||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23859463 |
ttcttcataaggctctaaattgcatgcataacaaaattttctcaatcatttggagcttggaagtt |
23859527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University