View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4552-Insertion-2 (Length: 550)
Name: NF4552-Insertion-2
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 7 - 550
Target Start/End: Original strand, 33388246 - 33388800
Alignment:
| Q |
7 |
accttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
95 |
Q |
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| T |
33388246 |
accttcatcatcaattgcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
33388345 |
T |
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| Q |
96 |
tctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattt |
195 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388346 |
tctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttattt |
33388445 |
T |
|
| Q |
196 |
tggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctggtgtgcactagcctttgatattggagacaccaacaaagactc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33388446 |
cggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctggtgtgcactagcctttgatattggagacaccaacaaagactc |
33388545 |
T |
|
| Q |
296 |
aacacgagttcggggataataaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgtt |
395 |
Q |
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| T |
33388546 |
aacacgagttcggggattataaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgtt |
33388645 |
T |
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| Q |
396 |
gataccacaatctttcttccagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtggaataca |
495 |
Q |
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| T |
33388646 |
gataccacaatctttcttccagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaataca |
33388745 |
T |
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| Q |
496 |
gtgataacactttcacagggcccaccttctcccctaaatttgcaactttgtttga |
550 |
Q |
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| T |
33388746 |
gtgataacactttcacagggcccaccttctcccctaaatttgcaactttgtttga |
33388800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 48 - 543
Target Start/End: Original strand, 38779339 - 38779834
Alignment:
| Q |
48 |
aaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctca |
147 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38779339 |
aaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctca |
38779438 |
T |
|
| Q |
148 |
aaattccaggataggtctgcggctgaagatcattactgaaacttattttggtatagagtctatagcatttccccggttgagttcttccggcacgacctga |
247 |
Q |
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| T |
38779439 |
aaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcacgtccaga |
38779538 |
T |
|
| Q |
248 |
tctctggtgtgcactagcctttgatattggagacaccaacaaagactcaacacgagttcggggataataaaccttctgcttggcaaatccagggtcaata |
347 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || | ||| ||||||||||| ||||||||||| |||||| |
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| T |
38779539 |
cctctggtgtgcactagcttttgatattggagacaccaacaaagactcaacacgaactcgagggttatagaccttctgcttagcaaatccaggatcaata |
38779638 |
T |
|
| Q |
348 |
acatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactggaggcggag |
447 |
Q |
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| T |
38779639 |
acatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaactggaggtggag |
38779738 |
T |
|
| Q |
448 |
ctggctcaaaaatcttctgctgcatagctgggggaagggtggaatacagtgataacactttcacagggcccaccttctcccctaaatttgcaactt |
543 |
Q |
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||||||||||||||||||| ||||||||||||||||| || ||||| | || | |||||||||||||||||| ||||| | |||||||||| |
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| T |
38779739 |
ctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtcccccatgtttgcaactt |
38779834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 7 - 521
Target Start/End: Complemental strand, 20816858 - 20816333
Alignment:
| Q |
7 |
accttcatcatcaattgcacctaagtaattcaacactt-----------attaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatca |
95 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| |||||||| |
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| T |
20816858 |
accttcatcatccattgcacccaagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcg |
20816759 |
T |
|
| Q |
96 |
tctatacccaatttcttcaatgtaagaacagtgtttgcaagattagatctcaaaattccaggataggtctgcggctgaagatcattactgaaacttattt |
195 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
20816758 |
tctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttcttt |
20816659 |
T |
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| Q |
196 |
tggtatagagtctatagcatttccccggttgagttcttccggcacgacctgatctctggtgtgcactagcctttgatattggagacaccaacaaagactc |
295 |
Q |
| |
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||||| |||||| |||||||||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
20816658 |
ccgtataaagtctaaagcatttccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagacaccaataaagactc |
20816559 |
T |
|
| Q |
296 |
aacacgagttcggggataataaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgtt |
395 |
Q |
| |
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|||||||| ||| || | ||||||||||||||| || ||||||||||||| |||||| |||||||||| || ||||| ||||||||||||||||||||| |
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| T |
20816558 |
aacacgagctcgagggttataaaccttctgcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgtt |
20816459 |
T |
|
| Q |
396 |
gataccacaatctttcttccagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtggaataca |
495 |
Q |
| |
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||||||| |||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||| | || |||||||| |||||||| || ||||||| |
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| T |
20816458 |
gataccaaaatcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaataca |
20816359 |
T |
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| Q |
496 |
gtgataacactttcacagggcccacc |
521 |
Q |
| |
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| || |||||||||||||||||| |
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| T |
20816358 |
acggtacaactttcacagggcccacc |
20816333 |
T |
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