View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4552-Insertion-4 (Length: 317)
Name: NF4552-Insertion-4
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552-Insertion-4 |
 | |
|
| [»] chr4 (9 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr5 (5 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 14179057 - 14178755
Alignment:
| Q |
17 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
14179057 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcaataaaaaaaatgaac |
14178958 |
T |
|
| Q |
113 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14178957 |
accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
14178858 |
T |
|
| Q |
213 |
tccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttataga |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14178857 |
tccactc--tctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
14178760 |
T |
|
| Q |
313 |
gatga |
317 |
Q |
| |
|
||||| |
|
|
| T |
14178759 |
gatga |
14178755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 14174304 - 14174001
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |
|
|
| T |
14174304 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagtgataaaaaaaatgaa |
14174205 |
T |
|
| Q |
112 |
caccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174204 |
caccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
14174105 |
T |
|
| Q |
212 |
ctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatag |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14174104 |
ctccactc--tctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
14174007 |
T |
|
| Q |
312 |
agatga |
317 |
Q |
| |
|
|||||| |
|
|
| T |
14174006 |
agatga |
14174001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 28611566 - 28611869
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
28611566 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaatgaa |
28611665 |
T |
|
| Q |
112 |
caccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611666 |
caccaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattct |
28611765 |
T |
|
| Q |
212 |
ctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatag |
311 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28611766 |
ctcca--ctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatag |
28611863 |
T |
|
| Q |
312 |
agatga |
317 |
Q |
| |
|
|||||| |
|
|
| T |
28611864 |
agatga |
28611869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 28606805 - 28607107
Alignment:
| Q |
17 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||| |
|
|
| T |
28606805 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaaattaac |
28606904 |
T |
|
| Q |
113 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28606905 |
accaatatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
28607004 |
T |
|
| Q |
213 |
tccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttataga |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28607005 |
tcca--ctctctcacacacacaagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttataga |
28607102 |
T |
|
| Q |
313 |
gatga |
317 |
Q |
| |
|
||||| |
|
|
| T |
28607103 |
gatga |
28607107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 44161949 - 44161650
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
44161949 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
44161850 |
T |
|
| Q |
114 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44161849 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattaca--attctct |
44161752 |
T |
|
| Q |
214 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagag |
313 |
Q |
| |
|
||| |||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44161751 |
cca--ctctcttacacacacaagagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagag |
44161654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 11104829 - 11104533
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn-tgaacacca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |
|
|
| T |
11104829 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcgcagctgtagcgataaaaatgaacacca |
11104730 |
T |
|
| Q |
117 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
216 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
11104729 |
atatttaacatagaaaatcctctaatatcgagggtaa-accacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctcca |
11104631 |
T |
|
| Q |
217 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagagatg |
316 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
11104630 |
ctctcttacacaca---aagagatacaatatagtgtttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatg |
11104534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 48826701 - 48826998
Alignment:
| Q |
17 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnnt--gaacac |
114 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||| |||||||||| |||||| |
|
|
| T |
48826701 |
ttgttgggatcgacgagcttaacgcaattgtaaattaaaatttcaaaattcaa--gagattggatcttgcagcgcagcggtagcgatagaaaaagaacac |
48826798 |
T |
|
| Q |
115 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
214 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48826799 |
caatatttaacgtggaaaatcctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctctt |
48826897 |
T |
|
| Q |
215 |
cactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagaga |
314 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48826898 |
cgctctctt--acacacacaagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagaga |
48826995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 48708155 - 48708256
Alignment:
| Q |
113 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
212 |
Q |
| |
|
||||||||||||| || ||||| || ||||||| || |||| |||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
48708155 |
accaatatttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctc |
48708254 |
T |
|
| Q |
213 |
tc |
214 |
Q |
| |
|
|| |
|
|
| T |
48708255 |
tc |
48708256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 288
Target Start/End: Original strand, 24726288 - 24726442
Alignment:
| Q |
129 |
gaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctctcaca |
228 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| ||||| | |
|
|
| T |
24726288 |
gaaaaccatctaatatcaagggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct----ta |
24726383 |
T |
|
| Q |
229 |
cacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattat |
288 |
Q |
| |
|
| ||| |||||||| |||| ||||| |||||||| ||||| |||||| |||| |||||| |
|
|
| T |
24726384 |
ccgacacgagatacactatattgttttccgtgaga-ccactcctattcaaatgttattat |
24726442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 12931042 - 12930740
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn---tgaac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||| |
|
|
| T |
12931042 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaac |
12930943 |
T |
|
| Q |
113 |
accaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930942 |
accaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctc |
12930843 |
T |
|
| Q |
213 |
tccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttataga |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12930842 |
tccactc--tctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttataga |
12930745 |
T |
|
| Q |
313 |
gatga |
317 |
Q |
| |
|
||||| |
|
|
| T |
12930744 |
gatga |
12930740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 12935786 - 12935486
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn---tgaacac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |||||||||| ||||||| |
|
|
| T |
12935786 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaattcaaaagaaactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
12935687 |
T |
|
| Q |
115 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12935686 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
12935587 |
T |
|
| Q |
215 |
cactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagaga |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12935586 |
cactc--tctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagaga |
12935489 |
T |
|
| Q |
315 |
tga |
317 |
Q |
| |
|
||| |
|
|
| T |
12935488 |
tga |
12935486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 26504945 - 26505063
Alignment:
| Q |
110 |
aacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatatt |
209 |
Q |
| |
|
|||| |||||||||||||| || ||| ||||||| ||| ||| ||||| | ||||||||| |||||||||| |||||| |||| |||||||||||||| |
|
|
| T |
26504945 |
aacatcaatatttaacgtg-aataccgtctaataacaaggcaaa-accacagtacaaactccaaaaaatattcaactataataaaaaatattacaatatt |
26505042 |
T |
|
| Q |
210 |
ctctccactctctctcacaca |
230 |
Q |
| |
|
|| || ||||||| ||||||| |
|
|
| T |
26505043 |
ctttcaactctctttcacaca |
26505063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 15589060 - 15588948
Alignment:
| Q |
108 |
tgaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaata |
207 |
Q |
| |
|
|||||| ||||||||| || ||||||||||| || |||| |||| | || | ||||||||| ||||||||| |||| ||| ||| |||||||||| | |
|
|
| T |
15589060 |
tgaacatcaatatttattttgaaaaaccctctattaatgagagaaaaatcaagtgacaaactctaaaaaatatttcactttatcaaacaatattacaaca |
15588961 |
T |
|
| Q |
208 |
ttctctccactct |
220 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
15588960 |
ttttctccactct |
15588948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 26504850 - 26504895
Alignment:
| Q |
26 |
tcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa |
71 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
26504850 |
tcgacgagtttaatggaagtgtaaattaaaatttcaaaatccaaaa |
26504895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 34907503 - 34907203
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn---tgaacac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
34907503 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagactggatcttgcagcgcagcggtagcgataaaaaaatgaacac |
34907404 |
T |
|
| Q |
115 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34907403 |
caatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
34907304 |
T |
|
| Q |
215 |
cactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagaga |
314 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34907303 |
cactc--tctcacacacacaagagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagaga |
34907206 |
T |
|
| Q |
315 |
tga |
317 |
Q |
| |
|
||| |
|
|
| T |
34907205 |
tga |
34907203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 37040426 - 37040727
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn----tgaaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
37040426 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaaagactggatcttgcagcgcagcggtagcgataaaaaaaatgaaca |
37040525 |
T |
|
| Q |
114 |
ccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37040526 |
ccaatatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttct |
37040625 |
T |
|
| Q |
214 |
ccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagag |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37040626 |
cca--ctctctcacacacacaagagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagag |
37040723 |
T |
|
| Q |
314 |
atga |
317 |
Q |
| |
|
|||| |
|
|
| T |
37040724 |
atga |
37040727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 15290596 - 15290295
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaa-gagattggatcttgcagcacagcggtagcnnnnnnn----tga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||| |||| |||| ||| |
|
|
| T |
15290596 |
cttgttgggctcgacgagcttaacgcaattgtaaattaaaatttcaaaatccaaaaagagattggatcttgcagcgcagccttagcgataaaaaaaatga |
15290497 |
T |
|
| Q |
111 |
acaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| | | ||||||||||||||||| ||| || |||||||||||| |||||||||||||||||| |
|
|
| T |
15290496 |
acaccaatatttaacgtggaaaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattc |
15290397 |
T |
|
| Q |
211 |
tctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttata |
310 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
15290396 |
tctccact--ctcttacacacacaagagatacaatatagtgttt-ccgtgagacccactcctattcgaatgctat--tatttcagcacctagaagttata |
15290302 |
T |
|
| Q |
311 |
gagatga |
317 |
Q |
| |
|
||||||| |
|
|
| T |
15290301 |
gagatga |
15290295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 12099361 - 12099063
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn-tgaacacca |
116 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| || || |||| |||| | || |
|
|
| T |
12099361 |
tgttgggctcgacgagtttaacgcgagtgtaaattaaaattccaaaatccaaaagagatatgatcttgcagctcaccgatagcgataaaaatgaaaagca |
12099262 |
T |
|
| Q |
117 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
216 |
Q |
| |
|
|||||| ||||| ||||||||||||| || ||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12099261 |
atattttacgtgaaaaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctcca |
12099162 |
T |
|
| Q |
217 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagagatg |
316 |
Q |
| |
|
|| |||| |||| ||||||||| ||||||| ||||||| ||||||| |||| |||||| |||| |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
12099161 |
ct--ctcttacacgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatg |
12099064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 12082227 - 12082080
Alignment:
| Q |
165 |
aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagac |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||| |||||| |
|
|
| T |
12082227 |
aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctctt--acacggaaaagagatacaatatagtgtttctaatgagac |
12082131 |
T |
|
| Q |
265 |
ccacttctattctaatgctattatattatagcacctagaagttatagagat |
315 |
Q |
| |
|
| || |||||| |||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
12082130 |
tcgctcctattcaaatgttattattttatagcgcctagaagttatagagat |
12082080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 275
Target Start/End: Original strand, 2757370 - 2757469
Alignment:
| Q |
174 |
aaaatattccactatattaaagaatattacaatattctctccactctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttcta |
273 |
Q |
| |
|
|||||||||||||||||| || |||||| || ||||||||||||||||| | ||||| |||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
2757370 |
aaaatattccactatatttaaaaatattgcactattctctccactctcttt--cacactcaagagatacaatatagtgtttttagtgagacacactccta |
2757467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 12084751 - 12084669
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc |
100 |
Q |
| |
|
|||||||||| ||||||||||| | || ||||||||||||| |||||||||| ||| ||||||||||| ||| || ||||||| |
|
|
| T |
12084751 |
tgttgggctcaacgagcttaacacgagggtaaattaaaatttcaaaatccaatagacattggatcttgtagcgcaacggtagc |
12084669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 2757211 - 2757273
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattg |
78 |
Q |
| |
|
||||||| | || ||||||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2757211 |
cttgttgtgttcaacgagcttattacaagtgtaaattaaaattccaaaattcaaaagaaattg |
2757273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 29106878 - 29107175
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn-tgaacacca |
116 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
29106878 |
tgttgggatcgaggagcttaatgcaagtgtaaattaaaattccaaaatccaaaaaagattggatcttgcagcgcagcggtagcgttaaaaatgaacacca |
29106977 |
T |
|
| Q |
117 |
atatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29106978 |
atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcca |
29107077 |
T |
|
| Q |
217 |
ctctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagagatg |
316 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
29107078 |
--ctctcttacacacacaagagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatg |
29107174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 42910992 - 42911290
Alignment:
| Q |
17 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn-tgaacacc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||| | | |||||||| |
|
|
| T |
42910992 |
ttgttgggctcgacgagcttaacgcaagtggaaattaaaattttaaaatccaaaagagattagatcttgcagcgcagcggcaacgataaaaatgaacacc |
42911091 |
T |
|
| Q |
116 |
aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctcc |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42911092 |
aatatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctcc |
42911190 |
T |
|
| Q |
216 |
actctctctcacacacacaagagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagagat |
315 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
42911191 |
actct--ctcacacacacaaaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagat |
42911288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 38994697 - 38994779
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggta |
98 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||||||||||||||| ||||| | |||||||||||||| |||||||| |
|
|
| T |
38994697 |
cttgttgggcttgacgatcttaatgctagtgtaaattaaaattccaaaacccaaacaaaattggatcttgcagtgcagcggta |
38994779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 38997230 - 38997320
Alignment:
| Q |
109 |
gaacaccaatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata |
199 |
Q |
| |
|
||||| |||||||| |||| ||||||||||||||| || |||| || |||||||||||||| ||||||| |||| |||||||||||||| |
|
|
| T |
38997230 |
gaacagcaatattttacgtcgaaaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata |
38997320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 38997136 - 38997193
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaaga |
73 |
Q |
| |
|
||||||||| |||| | |||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38997136 |
cttgttgggttcgaagggcttaatgcgggtgtaaattaaaattccagaatccaaaaga |
38997193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 8539549 - 8539247
Alignment:
| Q |
17 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagcnnnnnnn--tgaacac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
8539549 |
ttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaattctaaaagagattggatcttgcagcgcagcggtaacaataaaaaatgaacat |
8539450 |
T |
|
| Q |
115 |
caatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
8539449 |
caatatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc |
8539350 |
T |
|
| Q |
215 |
cactctctctcacacacacaagagatacaa---tatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatag |
311 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||| | ||||||||| ||| |||||||| ||||||||| |
|
|
| T |
8539349 |
cact--ctcttacacacacaagagatacaatattatagtgttt-ccgtgagacccactcctattcgattgctattattttacagcacctaaaagttatag |
8539253 |
T |
|
| Q |
312 |
agatga |
317 |
Q |
| |
|
|||||| |
|
|
| T |
8539252 |
agatga |
8539247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2100199 - 2100379
Alignment:
| Q |
18 |
tgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattgga-tcttgcagcacagcggtagcnnnnnnnt-gaacacc |
115 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| || | |||||||||| || || | ||||| | |
|
|
| T |
2100199 |
tgttgggctcgacgagcttaacacaagtgtaaattaaaattccaaaattcataagagatttgaattttgcagcacaacgataatgataaaattgaacatc |
2100298 |
T |
|
| Q |
116 |
aatatttaacgtggaaaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata |
199 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||| |||| || ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2100299 |
aatatttaaggtggaaaaccctttaataatgagcgaaaaac---ggggcaaactccgaaaaatattccactatattaaagaata |
2100379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2100723 - 2100771
Alignment:
| Q |
192 |
aaagaatattacaatattctctccactctctctcacacacacaagagatac |
242 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||||||||| |
|
|
| T |
2100723 |
aaagaatattacaatattctctcca--ctctcttacatacacaagagatac |
2100771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 51303021 - 51302937
Alignment:
| Q |
16 |
cttgttgggctcgacgagcttaacgcaagtgtaaattaaaattccaaaatccaaaagagattggatcttgcagcacagcggtagc |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
51303021 |
cttgttgggatcgacgagcttaatgcaagtgtaaattaaaatttcaaaatccaaaacagattggatcttgcagcgcagcggtagc |
51302937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 51302306 - 51302225
Alignment:
| Q |
236 |
gagatacaatatagtgtttcccgtgagacccacttctattctaatgctattatattatagcacctagaagttatagagatga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
51302306 |
gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatga |
51302225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 51302344 - 51302308
Alignment:
| Q |
108 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51302344 |
tgaacaccaatatttaacgtggaaaaccctctaatac |
51302308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University