View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4552-Insertion-6 (Length: 118)

Name: NF4552-Insertion-6
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4552-Insertion-6
NF4552-Insertion-6
[»] chr6 (7 HSPs)
chr6 (13-118)||(22205144-22205249)
chr6 (10-118)||(20237827-20237935)
chr6 (10-118)||(22131811-22131919)
chr6 (13-118)||(24385356-24385461)
chr6 (10-118)||(20085914-20086022)
chr6 (11-66)||(20205286-20205341)
chr6 (11-66)||(22099309-22099364)
[»] scaffold0264 (1 HSPs)
scaffold0264 (10-118)||(15864-15971)
[»] scaffold0074 (1 HSPs)
scaffold0074 (10-118)||(47967-48075)
[»] scaffold0007 (1 HSPs)
scaffold0007 (10-118)||(5494-5602)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 2e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 22205144 - 22205249
Alignment:
Q  13 aatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttgtac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  ||||| |||||||| |||||||||||| |||||    
T  22205144 aatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcggaaatttccaaaaagtaaaagtggaagaaatggtgtac 22205243  T
Q  113 ggcctc 118  Q
    ||||||    
T  22205244 ggcctc 22205249  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 20237935 - 20237827
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||  |  || |||||||||| | ||    
T  20237935 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtggaagaaaaggtg 20237836  T
Q  110 tacggcctc 118  Q
    |||||||||    
T  20237835 tacggcctc 20237827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 22131919 - 22131811
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||  |  || |||||||||| | ||    
T  22131919 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcttccaacgccacaaatggcacaacattccatattgctaaagtggaagaaaaggtg 22131820  T
Q  110 tacggcctc 118  Q
    |||||||||    
T  22131819 tacggcctc 22131811  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 24385356 - 24385461
Alignment:
Q  13 aatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttgtac 112  Q
    |||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||  ||||| |||||||||||| |||||    
T  24385356 aatcacaaacgataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcaaaaaattctatactgtaaaagtggaagaaatggtgtac 24385455  T
Q  113 ggcctc 118  Q
    ||||||    
T  24385456 ggcctc 24385461  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 20086022 - 20085914
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||  ||| |||  |||  || || ||||| |||||| ||    
T  20086022 tacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccacaaatggcgaaaaattttatactgttaaagtggatgaaatggtg 20085923  T
Q  110 tacggcctc 118  Q
    |||||||||    
T  20085922 tacggcctc 20085914  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 20205341 - 20205286
Alignment:
Q  11 acaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac 66  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||  || ||||||||    
T  20205341 acaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 20205286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 22099364 - 22099309
Alignment:
Q  11 acaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccac 66  Q
    ||||||||| |||||||| ||||||||||||| ||||||||||  || ||||||||    
T  22099364 acaatcactgacaaaaacatcaaattacttctgtcttatttgttgtcgaacgccac 22099309  T

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Target: scaffold0264 (Bit Score: 65; Significance: 5e-29; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 15971 - 15864
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| | ||  ||||| |||||||| |||||||||||| ||    
T  15971 tacaatcactaacaataacttcaaattacttctctcttatctgtcctccaacgccac-aatggcagaaatttccaaaaagtaaaagtggaagaaatggtg 15873  T
Q  110 tacggcctc 118  Q
    |||||||||    
T  15872 tacggcctc 15864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 65; Significance: 5e-29; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 47967 - 48075
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||  || || |||||||||||| ||    
T  47967 tacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaatgctg 48066  T
Q  110 tacggcctc 118  Q
    || ||||||    
T  48067 tatggcctc 48075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 10 - 118
Target Start/End: Original strand, 5494 - 5602
Alignment:
Q  10 tacaatcactaacaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggaaaaacattccataaagtaaatgtggaagaaatgttg 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||  || || |||||||||| | ||    
T  5494 tacaatcactaagaaaaacttcaaattacttctctcttatttgtcctccaacgccacaaatggcgaaaaatcccatactgttaaagtggaagaaacgctg 5593  T
Q  110 tacggcctc 118  Q
    || ||||||    
T  5594 tatggcctc 5602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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