View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4552_high_10 (Length: 228)
Name: NF4552_high_10
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 38428471 - 38428243
Alignment:
| Q |
7 |
cattgttcaaaaattaaattacacttctctaagcgcacttgcataactttatattattgtgactgatgtgagaagtgttattgattaacaaaccgcgtga |
106 |
Q |
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| T |
38428471 |
cattgttcaaaaattaaattacacttttctaagcgcacttgcataactttatattattgtgactgatgtgagaagtgttattgattaacaaaccgcgtga |
38428372 |
T |
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| Q |
107 |
gaggcaaaaca------tataatgcaatatactcttgtgaacttttcttatatgagataaataggttaagaaagtt-atgtatttagttaataatataga |
199 |
Q |
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| T |
38428371 |
gaggcaaaacatatatatataatgcaatatactcttgtgaacttttcttatatgagataaataggttaagaaagttgatgtatttagttaataatataga |
38428272 |
T |
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| Q |
200 |
tcaaatatatccgttttattaatcctttt |
228 |
Q |
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||||||||||| |||||||||||| |||| |
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| T |
38428271 |
tcaaatatatctgttttattaatcttttt |
38428243 |
T |
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