View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4552_high_3 (Length: 316)
Name: NF4552_high_3
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 39809154 - 39809421
Alignment:
| Q |
13 |
agcaaagggtggcggctgcagcgagagaaagtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatct |
112 |
Q |
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| T |
39809154 |
agcaaagggtggcggctgcagcgagagaaagtggtgatcatttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatct |
39809253 |
T |
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| Q |
113 |
tcatcgtacatggcttaaggttgttgccactcgtaatacaagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaag |
212 |
Q |
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| T |
39809254 |
tcatcgtacatggcttaaggttgttgccactcgtaatacaagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaag |
39809353 |
T |
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| Q |
213 |
aagaagaaggtttttatcattcaattattatcaaacttgattgccaattttcattcatcaacatacat |
280 |
Q |
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| T |
39809354 |
aagaagaaggtttttatcattcaattattatcaaacttgattgccaattttcattcatcaatatacat |
39809421 |
T |
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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 51 - 224
Target Start/End: Original strand, 15794812 - 15794985
Alignment:
| Q |
51 |
catttcaatccaacaaagtactttgttgaagaagtagtgagtgctgttgatgagtctgatcttcatcgtacatggcttaaggttgttgccactcgtaata |
150 |
Q |
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| T |
15794812 |
catttcaatccaacaaagtattttgtggaagaggttgtggcaagtgttgatgaatctgatttatatcgcacttgggttaaggtggttgcaacacgcaaca |
15794911 |
T |
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| Q |
151 |
caagggaacgtagctcaagacttgagaacatgtgttggcgtatttggcatcttgctcgcaagaagaagaaggtt |
224 |
Q |
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| T |
15794912 |
caagggaaagaagttcaaggttggagaacatgtgttggcgtatttggcatcttgcacgaaagaagaagcaggtt |
15794985 |
T |
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