View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4552_high_8 (Length: 240)

Name: NF4552_high_8
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4552_high_8
NF4552_high_8
[»] chr2 (3 HSPs)
chr2 (38-222)||(18056401-18056585)
chr2 (6-44)||(30400016-30400054)
chr2 (6-43)||(3309027-3309064)
[»] chr6 (1 HSPs)
chr6 (5-44)||(29255425-29255464)
[»] chr5 (2 HSPs)
chr5 (6-45)||(6216967-6217006)
chr5 (6-44)||(41630572-41630610)
[»] chr3 (2 HSPs)
chr3 (1-43)||(32701562-32701604)
chr3 (9-45)||(35864915-35864951)
[»] chr1 (2 HSPs)
chr1 (6-43)||(15431646-15431683)
chr1 (6-43)||(48750260-48750297)
[»] chr7 (1 HSPs)
chr7 (4-44)||(9977184-9977224)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 38 - 222
Target Start/End: Original strand, 18056401 - 18056585
Alignment:
Q  38 taattgatgagagtttttcactagaaatcaaacgaacacgacaacaagatagaaaatcatacaacgctgcaaaaggcaacatcgccctttgacaacgaaa 137  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  18056401 taattgatgagagtttttcactagaaaccaaacgaacaccgcaacaagatagaaaatcatacaacgctgcaaaacacaacatcaccctttgacaacgaaa 18056500  T
Q  138 tcacaagggnnnnnnnctagatctatgtaaaacttactaatttagactaaaatagggagataaagatggaaatggatgattttgt 222  Q
    |||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||    
T  18056501 tcacaagggaaaaaaactagatctatgtaaaacttactaatttagactaaaatatggagataaagatggaaataggtgattttgt 18056585  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 30400016 - 30400054
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattga 44  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  30400016 aacgttgacgcccaaatcattgattgaatttgtaattga 30400054  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 3309064 - 3309027
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattg 43  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  3309064 aacgttaacgcccaaatcattgattgaatttgtgattg 3309027  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 29255425 - 29255464
Alignment:
Q  5 taacgttaacgcccaaatcattgattaaatttgtaattga 44  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  29255425 taacgttgacgcccaaatcattgattgaatttgtaattga 29255464  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 6217006 - 6216967
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattgat 45  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  6217006 aacgttgacgcccaaatcattgattgaatttgtaattgat 6216967  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 41630610 - 41630572
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattga 44  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  41630610 aacgttgacgcccaaatcattgattgaatttgtaattga 41630572  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32701604 - 32701562
Alignment:
Q  1 tctataacgttaacgcccaaatcattgattaaatttgtaattg 43  Q
    |||| |||||| |||||||||||||||||| ||||||||||||    
T  32701604 tctacaacgttgacgcccaaatcattgattgaatttgtaattg 32701562  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 35864915 - 35864951
Alignment:
Q  9 gttaacgcccaaatcattgattaaatttgtaattgat 45  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  35864915 gttaacgtccaaatcattgattgaatttgtaattgat 35864951  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15431646 - 15431683
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattg 43  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  15431646 aacgttgacgcccaaatcattgattgaatttgtaattg 15431683  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 48750297 - 48750260
Alignment:
Q  6 aacgttaacgcccaaatcattgattaaatttgtaattg 43  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  48750297 aacgttgacgcccaaatcattgattaaatttgtgattg 48750260  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 9977184 - 9977224
Alignment:
Q  4 ataacgttaacgcccaaatcattgattaaatttgtaattga 44  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  9977184 ataacgttgacgcccaaatcattgtttgaatttgtaattga 9977224  T

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