View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4552_low_10 (Length: 239)

Name: NF4552_low_10
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4552_low_10
NF4552_low_10
[»] chr3 (7 HSPs)
chr3 (18-239)||(13881143-13881363)
chr3 (31-229)||(24183482-24183677)
chr3 (120-225)||(52633506-52633610)
chr3 (149-235)||(1861319-1861405)
chr3 (132-229)||(53783515-53783610)
chr3 (141-208)||(29826074-29826141)
chr3 (132-226)||(37812975-37813069)
[»] scaffold0031 (1 HSPs)
scaffold0031 (18-239)||(106140-106362)
[»] chr2 (3 HSPs)
chr2 (18-239)||(6944548-6944768)
chr2 (169-239)||(1904791-1904861)
chr2 (37-229)||(32454884-32455077)
[»] chr7 (6 HSPs)
chr7 (39-239)||(15582077-15582278)
chr7 (18-232)||(34422914-34423128)
chr7 (18-165)||(1273978-1274126)
chr7 (161-231)||(1275384-1275454)
chr7 (75-237)||(8062315-8062477)
chr7 (120-229)||(5887346-5887455)
[»] chr6 (4 HSPs)
chr6 (18-239)||(35122222-35122444)
chr6 (18-239)||(33344448-33344667)
chr6 (31-239)||(13419393-13419595)
chr6 (120-229)||(2805195-2805304)
[»] chr1 (9 HSPs)
chr1 (20-235)||(44559874-44560089)
chr1 (18-234)||(35388796-35389011)
chr1 (161-239)||(26173574-26173652)
chr1 (167-232)||(12029888-12029953)
chr1 (120-229)||(12667709-12667819)
chr1 (122-165)||(26173185-26173228)
chr1 (183-232)||(27086478-27086527)
chr1 (120-239)||(27953409-27953528)
chr1 (18-85)||(27086406-27086472)
[»] chr8 (3 HSPs)
chr8 (72-224)||(23762061-23762213)
chr8 (37-237)||(27490444-27490644)
chr8 (18-235)||(40038487-40038705)
[»] chr5 (2 HSPs)
chr5 (18-223)||(35147989-35148193)
chr5 (140-223)||(31653328-31653411)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-209)||(243738-243930)
[»] chr4 (5 HSPs)
chr4 (18-165)||(38261036-38261185)
chr4 (120-229)||(41749108-41749217)
chr4 (156-235)||(28145378-28145456)
chr4 (120-178)||(3976094-3976152)
chr4 (18-239)||(6102701-6102922)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 13881363 - 13881143
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    |||||||||||||||||| ||||||||| ||| ||||||||| |||| |||||| |||| |||||||  ||||||||| |||| |||||| ||||| ||     
T  13881363 agttgtggtgcttccggtgacattggttttggtggtttactttgtgacaacaagagaaagtggatagttggattctcttctaatgaggggtagggg-tgt 13881265  T
Q  118 attttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctc 217  Q
     ||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||| ||||||||    
T  13881264 gttttttgttgagctatttggggtttaccaaggtttgatgttggtaattaacaactctattcagcgagttatttgtgaaacatattctttaaaagttctc 13881165  T
Q  218 catcttcttcaagatccagatc 239  Q
    ||||||||||||||||| ||||    
T  13881164 catcttcttcaagatccggatc 13881143  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 24183677 - 24183482
Alignment:
Q  31 ccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtgaattttttgctgag 130  Q
    ||||||||||||||| | ||| |||| ||||||||||||| ||| |||||||||| ||||||||| |||  |||||  ||    ||   |||||||||||    
T  24183677 ccggtaacattggttttagagatttaattcgtgataacaaaggagattggatagcaggattctcttctagtgagggagaga---tgtgctttttgctgag 24183581  T
Q  131 ctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaa 229  Q
     ||||| ||||||| |||||||||||||||||||| ||||||||||||||||  |||||||| || |   ||||||||||||| |||||||||||||||    
T  24183580 ttatttggggtttatcatggtttgatgttggtaatcaacaactctattcaacaggttatttgtgagatgaattctttagaagtcctccatcttcttcaa 24183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 52633610 - 52633506
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcca 219  Q
    ||||| ||||| ||||| |||| || |||||||||||||||||||| ||||  | ||||||||||||||||||| |||||| |||||||||| | |||||    
T  52633610 tttttactgagttattt-gggtctatcatggtttgatgttggtaatcaacatttatattcaacgagttatttgcaaaacagtttctttagaaatcctcca 52633512  T
Q  220 tcttct 225  Q
    ||||||    
T  52633511 tcttct 52633506  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 1861405 - 1861319
Alignment:
Q  149 ggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatcca 235  Q
    |||||| |||||||| | ||||||||||||||||   ||||||||| ||||||||||||||||||||||  ||||||| | ||||||    
T  1861405 ggtttgttgttggtattcaacaactctattcaacatattatttgcgtaacagattctttagaagttctctgtcttctttacgatcca 1861319  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 229
Target Start/End: Complemental strand, 53783610 - 53783515
Alignment:
Q  132 tatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaa 229  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||||| |  |||||||| || |  ||||||||||||   |||||||||||||||    
T  53783610 tatttggggtttaccatggtttgatgttggtcatcaacaactctattcagcaggttatttgtgagatggattctttagaa--cctccatcttcttcaa 53783515  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 29826141 - 29826074
Alignment:
Q  141 tttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattcttta 208  Q
    |||| |||||||||| |||||| || |||||||||||||||| |||||||||||| ||| || |||||    
T  29826141 tttatcatggtttgaagttggtcatcaacaactctattcaacaagttatttgcgagacaaatacttta 29826074  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 37812975 - 37813069
Alignment:
Q  132 tatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttctt 226  Q
    ||||| |||||||||||| |||| |||| ||||| ||  ||||| ||||||| |||||||| || | ||||| |||||||||  |||||||||||    
T  37812975 tatttggggtttaccatgatttgttgtttgtaatcaatgactctcttcaacgggttatttgtgagatagattatttagaagtcttccatcttctt 37813069  T

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Target: scaffold0031 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 106140 - 106362
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcaggggg-tg 116  Q
    |||||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||  ||| || ||||| |||| ||    
T  106140 agttgtggtgcttctggtgatattggttctagaggtttacttagtgataacaagggaaattggatagctggattctctaataatgatgggcaaggggatg 106239  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttct 216  Q
     | |||||| |||||||||| | |||||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||  |    
T  106240 cactttttgttgagctatttggcgtttaccatggtttaatgttggtaatcagcaactctattcaatgagttatttgcgaaacagattctttagaagtctt 106339  T
Q  217 ccatcttcttcaagatccagatc 239  Q
    |  ||||||||||||||||||||    
T  106340 ctgtcttcttcaagatccagatc 106362  T

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Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6944548 - 6944768
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggc-agggggtg 116  Q
    |||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||| ||||||| ||||| ||    
T  6944548 agttgtggtgcttctggtgacattggttctggaggtttacttcatgataacaagggaaattggatggctggattctcttctaatgaggggcaaggggatg 6944647  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttct 216  Q
       ||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| | |||||||||||  |    
T  6944648 tgctttttgccgagctattt-gggtttaccatggtttgatgttggcaatcaacaactctactcaacgagttatttgcgaaaca-aatctttagaagtcat 6944745  T
Q  217 ccatcttcttcaagatccagatc 239  Q
    |  ||||||||||||||||||||    
T  6944746 ctgtcttcttcaagatccagatc 6944768  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 1904861 - 1904791
Alignment:
Q  169 caactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatccagatc 239  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||    
T  1904861 caactttattcaacgagttatttgcgaaacatattctttagaagtcttccgtcttcttcaagatccagatc 1904791  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 229
Target Start/End: Complemental strand, 32455077 - 32454884
Alignment:
Q  37 acattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagg-gggtgaattttttgctgagctatt 135  Q
    ||||||||| ||| |||||||||||||| ||||||||  |||| ||||| || |||||| ||||  |||||||||    || |  |||||||||||| ||    
T  32455077 acattggttatggcggtttacttcgtgacaacaagggcgattgaatagctggtttctcttctaattaggggcaggattatgcacattttgctgagctctt 32454978  T
Q  136 tagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaa 229  Q
    | |  |||| ||||||||| |||||||| | |  |||||||||||||  ||||||| | | | ||||||| || |||| ||||  |||||||||    
T  32454977 tggtatttatcatggtttggtgttggtagtaagaaactctattcaacatgttatttacaagatagattctctacaagtcctccgccttcttcaa 32454884  T

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Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 15582077 - 15582278
Alignment:
Q  39 attggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcaggggg-tgaattttttgctgagctattta 137  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || ||||| |||| ||   |||| ||||||||||||     
T  15582077 attggttttggaggtttacttcgtgataacaagggaaattggatagctggattctcttctaatgatgggcaaggggatgcgcttttcgctgagctatttg 15582176  T
Q  138 gggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatccaga 237  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||  ||| |||||||||||||| |||    
T  15582177 gggtttaccatggtttgatgttggtaatcaacaactctattcaacgaattatttgcgaaacatattctttggaagtcttccgtcttcttcaagatctaga 15582276  T
Q  238 tc 239  Q
    ||    
T  15582277 tc 15582278  T

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Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 34422914 - 34423128
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    |||| ||||||||| ||  |||||||||||  |||||||||||||||||| |||| |||||||||||| || |||||| ||||||||||||| ||| ||     
T  34422914 agttttggtgcttctggcgacattggttctaaaggtttacttcgtgataaaaaggaaaattggatagctggtttctcttctaacgaggggcatgggatgc 34423013  T
Q  118 attttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctc 217  Q
      |||||| |||||||||| |||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||| |||    
T  34423014 gctttttgatgagctatttggggtttaccatggtttgatgttggtaatcagcaactttatgcaacgagttatttgcgaaacagattctttagaagtcctc 34423113  T
Q  218 catcttcttcaagat 232  Q
      |||| ||||||||    
T  34423114 tgtcttattcaagat 34423128  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 1273978 - 1274126
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggg-gtg 116  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| |||| ||||||||||||  ||    
T  1273978 agttgtggtgctttcggtgatattggttctggaggtttacttcgtgataacaagggaagttggatagctggaatctcttctaatgaggggcaggggtatg 1274077  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaat 165  Q
       ||||||||||||||||| | ||||||||||||||||||||||||||    
T  1274078 cgctttttgctgagctatttggagtttaccatggtttgatgttggtaat 1274126  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 1275384 - 1275454
Alignment:
Q  161 gtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaaga 231  Q
    ||||| ||||||||| ||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||    
T  1275384 gtaatcaacaactctgttcaacgagttatttacgaaacagactctttagaagttttccgtcttcttcaaga 1275454  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 8062315 - 8062477
Alignment:
Q  75 aattggatagcgggattctctcctaacgaggggcaggggg-tgaattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaact 173  Q
    ||||||||||  || |||||| ||||||||||| |||||| || |  |||||||||||| ||| | ||||| ||||||||| |||||||||| |  ||||    
T  8062315 aattggatagttggtttctcttctaacgaggggtagggggatgca-cttttgctgagctctttggtgtttatcatggtttggtgttggtaataagaaact 8062413  T
Q  174 ctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatccaga 237  Q
    |||||||||  ||||||| ||| |  |||||| ||||||| ||||  ||||||||| |||||||    
T  8062414 ctattcaacaggttatttacgagatggattctctagaagtcctccgccttcttcaacatccaga 8062477  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 5887346 - 5887455
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcca 219  Q
    ||||| |||||||| || || ||||||| ||||| ||||||||||| |||||||| ||||||   ||||||||| | ||| ||||||| |||   |||||    
T  5887346 ttttttctgagctagttgggttttaccaaggtttaatgttggtaattaacaactcgattcaataggttatttgctagacaaattcttttgaatgcctcca 5887445  T
Q  220 tcttcttcaa 229  Q
    ||||||||||    
T  5887446 tcttcttcaa 5887455  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 35122222 - 35122444
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    |||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| |||| || ||||| | | ||     
T  35122222 agttgtggtgcttctggcaatattggttctggaggtttaattcgtgataacaagggaaattggatagttggattctcttctaatgatgggcaagagatgc 35122321  T
Q  118 a-ttttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttct 216  Q
      |||||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||   |    
T  35122322 gctttttttctgagctatttggggtttaccatggtttgatgttggtaatcaacgactctattcaacgagttatttgtgaaacagattctttagaagcatt 35122421  T
Q  217 ccatcttcttcaagatccagatc 239  Q
     | |||||||||||| |||||||    
T  35122422 tcgtcttcttcaagagccagatc 35122444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 33344667 - 33344448
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    |||||||||||||| ||  | ||||||| |||||||||| |||||||||||||||||||||||||||  ||||||||| |||| || ||||| | | ||     
T  33344667 agttgtggtgcttctggcgatattggttatggaggtttaattcgtgataacaagggaaattggatagttggattctcttctaatgatgggcaagagatgc 33344568  T
Q  118 attttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctc 217  Q
      ||||| ||| ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||  ||||||||||||   ||    
T  33344567 gcttttttctgggctatttggggtttaccatggtttgatgttggtaatcaacgactctattcaacgagttatttgtgaaac--attctttagaagcattc 33344470  T
Q  218 catcttcttcaagatccagatc 239  Q
    | |||||||||||| |||||||    
T  33344469 cgtcttcttcaagagccagatc 33344448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 13419595 - 13419393
Alignment:
Q  31 ccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcaggggg-tgaattttttgctga 129  Q
    ||||||||||||||| |  |||||||||||||| |||||||| |||||||||||  |||||||||        | ||||||| | || | ||||||||||    
T  13419595 ccggtaacattggttgtcaaggtttacttcgtggtaacaaggaaaattggatagttggattctctt-------gaggcagggagatgcactttttgctga 13419503  T
Q  130 gctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaa 229  Q
    ||||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||  ||  ||||| ||||    
T  13419502 gctatttggggtttatcatggtttgatgttggcaatcaacaactctattcaacgagttatttgcaaaatagattctttagaagtcatctgtcttcgtcaa 13419403  T
Q  230 gatccagatc 239  Q
    |||| |||||    
T  13419402 gatctagatc 13419393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 2805195 - 2805304
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcca 219  Q
    ||||||||||||||| | | |||||||||||||||||||| |||||||| ||||||| ||||   ||||||||||| | | ||||||| ||||| |||||    
T  2805195 tttttgctgagctatctggtgtttaccatggtttgatgtttgtaatgaataactctaatcaataggttatttgcgagagaaattctttggaagtcctcca 2805294  T
Q  220 tcttcttcaa 229  Q
    ||||||||||    
T  2805295 tcttcttcaa 2805304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 44559874 - 44560089
Alignment:
Q  20 ttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcaggggg-tgaa 118  Q
    |||||||||||||||| |||||| |||| |||||||||||||||||||||||  |||| ||||||| ||||||||| |||| |||||||| |||| ||      
T  44559874 ttgtggtgcttccggtgacattg-ttctagaggtttacttcgtgataacaagaaaaataggatagctggattctcttctaatgaggggcaaggggatgtg 44559972  T
Q  119 ttttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcc 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||| ||| ||| |||||| ||||   ||    
T  44559973 tttgttgctgagctatttagggtttaccatggtttgatgttggcaatcaacaattctattcaacgagttacttgcaaaatagaatctttacaagtcaccc 44560072  T
Q  219 atcttcttcaagatcca 235  Q
     ||||||||||||||||    
T  44560073 gtcttcttcaagatcca 44560089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 35389011 - 35388796
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    ||||||||||| || ||| ||||||||||||  |||||||||||||| ||||||||  |||||||| | || |||||| |||| ||||| |||||| ||     
T  35389011 agttgtggtgcctctggtgacattggttctgacggtttacttcgtgacaacaagggtgattggataactggtttctcttctaatgagggacaggggatgc 35388912  T
Q  118 attttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctc 217  Q
    | |||| |||||||| ||| | ||||| |||||||||||||||||||| |  |||||||||||||  |||||||| || | ||||||| | ||||| |||    
T  35388911 actttt-gctgagctttttggtgtttatcatggtttgatgttggtaataagaaactctattcaacatgttatttgtgagatagattctcttgaagtcctc 35388813  T
Q  218 catcttcttcaagatcc 234  Q
    || ||||||||| ||||    
T  35388812 caccttcttcaacatcc 35388796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 26173574 - 26173652
Alignment:
Q  161 gtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatccagatc 239  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  26173574 gtaatcaacaactctattcaacgagttatttacgaaacagattctttagaagtcctccatcttcttcaagatccagatc 26173652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 12029953 - 12029888
Alignment:
Q  167 aacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagat 232  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||| |||| |||| ||||||||    
T  12029953 aacaactctattcaacgagttattttcgaaacaaattctttagaagtcctccctcttgttcaagat 12029888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 12667819 - 12667709
Alignment:
Q  120 tttttgctgagctatttagggtttacca-tggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcc 218  Q
    ||||||||||||||||| | ||||| || ||| ||||| ||| | || ||| ||||||||||| ||||||| || || ||| ||||||||||||||||||    
T  12667819 tttttgctgagctatttggtgtttatcaatggcttgatattgatcatcaactactctattcaaagagttatgtgtgagacaaattctttagaagttctcc 12667720  T
Q  219 atcttcttcaa 229  Q
    || ||||||||    
T  12667719 atattcttcaa 12667709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 26173185 - 26173228
Alignment:
Q  122 tttgctgagctatttagggtttaccatggtttgatgttggtaat 165  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  26173185 tttgctgagctatttggggtttaccatggtttgatgttggtaat 26173228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 27086478 - 27086527
Alignment:
Q  183 gagttatttgcgaaacagattctttagaagttctccatcttcttcaagat 232  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  27086478 gagttatttgcgaaacagattcttgataagtcctccatcttcttcaagat 27086527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 239
Target Start/End: Complemental strand, 27953528 - 27953409
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcca 219  Q
    ||||||||||  ||||| | ||||| ||| ||||||||||||| || |||||||||||||| |  ||||||||  | ||| ||||||||||  ||||  |    
T  27953528 tttttgctgaaatatttggtgtttatcattgtttgatgttggttatcaacaactctattcatcaggttatttgttagacaaattctttagagtttcttta 27953429  T
Q  220 tcttcttcaagatccagatc 239  Q
    |||||||||| |||| ||||    
T  27953428 tcttcttcaacatcccgatc 27953409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 27086406 - 27086472
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagc 85  Q
    ||||||| | |||||||| ||||||||| ||||| |||| || |||||| ||||||||||||||||||    
T  27086406 agttgtgattcttccggtgacattggttatggag-tttattttgtgatagcaagggaaattggatagc 27086472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 23762061 - 23762213
Alignment:
Q  72 ggaaattggatagcgggattctctcctaacgaggggcagggggtgaattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaa 171  Q
    ||||||||||| ||  ||||||||  ||| |||||||| ||  ||  |||||||||||||||||| ||||| || |||| |||||||||||| | |||||    
T  23762061 ggaaattggattgctagattctcttataatgaggggcatggaatgtgttttttgctgagctatttggggttaacaatggcttgatgttggtattaaacaa 23762160  T
Q  172 ctctattcaacgagttatttgcgaaacagattctttagaagttctccatcttc 224  Q
    || ||||||||||||||||||||| ||| ||||| ||||||| || |||||||    
T  23762161 ctatattcaacgagttatttgcgagacaaattctatagaagtccttcatcttc 23762213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 37 - 237
Target Start/End: Complemental strand, 27490644 - 27490444
Alignment:
Q  37 acattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtgaattttttgctgagctattt 136  Q
    ||||||| |||||||||||||||||||| ||||||||  |||| ||   | | |||||| |||| |||||||||||| ||   |||||| |||||| |||    
T  27490644 acattggctctggaggtttacttcgtgagaacaagggtgattgaatgttgagtttctcttctaatgaggggcaggggatgtgctttttgttgagctcttt 27490545  T
Q  137 agggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatccag 236  Q
     | ||||| |||||||||| |||| |||  |  |||| ||||||||  ||||||| ||| | ||||||| | ||||| ||| |||||||| || ||||||    
T  27490544 ggtgtttatcatggtttgaagttgataaaaagaaactatattcaacaggttatttacgagatagattctctggaagtcctctatcttctttaacatccag 27490445  T
Q  237 a 237  Q
    |    
T  27490444 a 27490444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 40038705 - 40038487
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagg-gggtg 116  Q
    ||||| ||||| |||||| ||||||  |||||||||||||||| ||| ||||||||  |||| ||||| || |||||| |||| || ||| |||  | ||    
T  40038705 agttgcggtgcctccggtgacattgactctggaggtttacttcatgacaacaagggcgattgaatagctggtttctcttctaatgaagggtaggatgatg 40038606  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttct 216  Q
     | ||||||||||||| ||| | ||||| |||| ||||| ||||||||| |  |||| ||||||||  || | |||||| | ||||||| ||||||| ||    
T  40038605 cactttttgctgagctctttggtgtttatcatgatttgacgttggtaataagaaactttattcaacaggtgacttgcgagatagattctctagaagtcct 40038506  T
Q  217 ccatcttcttcaagatcca 235  Q
    |   ||||||||| |||||    
T  40038505 ctgccttcttcaacatcca 40038487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 35148193 - 35147989
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggggtga 117  Q
    |||||||||| || |||| |||||| |||| | ||||||||| |||| ||||  ||| |||||||||  ||||| ||| |||| || ||||| ||| ||     
T  35148193 agttgtggtgattacggtgacattgattctagtggtttacttagtgacaacataggagattggatagatggattttcttctaatgaagggcaagggatgc 35148094  T
Q  118 attttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctc 217  Q
     ||||||||||||||||||  |||||||||   ||||||||||| ||| |||||   ||||||||||||||||||| | ||| |||||||| |||| |||    
T  35148093 gttttttgctgagctatttgaggtttacca-aatttgatgttggcaatcaacaatgttattcaacgagttatttgcaagacaaattctttaaaagtcctc 35147995  T
Q  218 catctt 223  Q
    ||||||    
T  35147994 catctt 35147989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 31653411 - 31653328
Alignment:
Q  140 gtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatctt 223  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||| |||||||  ||||||||    
T  31653411 gtttaccatggtttgatgttggtaatcaacaactctatttaacgagttatttgcgagacatattctgtagaagtcttccatctt 31653328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 243738 - 243930
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcaggggg-tg 116  Q
    ||||||||| |||||||  |||||| |||| | |||||||||| ||| ||||| ||| |||||||||  |  |||||| ||||  ||||| || | | ||    
T  243738 agttgtggtacttccggcgacattgtttctagcggtttacttcttgacaacaaaggagattggatagtagacttctcttctaataaggggtagagagatg 243837  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttag 209  Q
     | |||||| |||| ||||| || ||||||||||||||| ||||||||| |||||||||||||||  |||||||||||| ||| |||||||||    
T  243838 cactttttgttgaggtatttgggatttaccatggtttgacgttggtaatcaacaactctattcaaaaagttatttgcgagacaaattctttag 243930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 38261185 - 38261036
Alignment:
Q  18 agttgtggtgcttccggtaacattggttc-tggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagg-gggt 115  Q
    |||||||||||||||| | |||||| ||  ||| |||||||||||||| ||||| | |||||| || || ||||||||| |||||||||||||||  | |    
T  38261185 agttgtggtgcttccgatgacattgatttatggtggtttacttcgtgacaacaatgaaaattgaatggctggattctcttctaacgaggggcaggaagat 38261086  T
Q  116 gaattttttgctgagctatttagggtttaccatggtttgatgttggtaat 165  Q
    |   |||||||||| ||||||  ||||||||||| ||||||||| |||||    
T  38261085 gccctttttgctgaactatttgaggtttaccatgatttgatgttagtaat 38261036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 229
Target Start/End: Original strand, 41749108 - 41749217
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctcca 219  Q
    |||||| ||||||  || ||||||| ||||| ||  |||||||||| ||||||||||||||||  ||||||||||| ||| |||||| | |||||| |||    
T  41749108 tttttgttgagcttcttggggtttatcatgggttcgtgttggtaattaacaactctattcaactcgttatttgcgagacaaattcttaaaaagttcccca 41749207  T
Q  220 tcttcttcaa 229  Q
    ||||||||||    
T  41749208 tcttcttcaa 41749217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 28145456 - 28145378
Alignment:
Q  156 tgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttctccatcttcttcaagatcca 235  Q
    |||||||||| ||||| | |||||||| ||||||||| |||||||||  |||||||||||||  ||||||||||||||||    
T  28145456 tgttggtaatcaacaaatttattcaacaagttatttgtgaaacagata-tttagaagttctctgtcttcttcaagatcca 28145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 3976094 - 3976152
Alignment:
Q  120 tttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctatt 178  Q
    ||||| || |||||||| |||||||||||| ||| ||| ||||||||||||||| ||||    
T  3976094 tttttactaagctatttggggtttaccatgattttatggtggtaatgaacaactttatt 3976152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6102701 - 6102922
Alignment:
Q  18 agttgtggtgcttccggtaacattggttctggaggtttacttcgtgataacaagggaaattggatagcgggattctctcctaacgaggggcagggg-gtg 116  Q
    ||||||||||| || ||  | |||| ||||||  ||||||||||||||||||||||| |||||||| | |  |||||| | ||  | ||| |||||  |     
T  6102701 agttgtggtgcctctggggatattgattctggcagtttacttcgtgataacaagggagattggatacctgacttctcttcaaataacgggaaggggaata 6102800  T
Q  117 aattttttgctgagctatttagggtttaccatggtttgatgttggtaatgaacaactctattcaacgagttatttgcgaaacagattctttagaagttct 216  Q
     | ||||||| ||||  ||| | |||||  |||||| |||||||||||| || ||| |||||||||  ||||||||| | | ||||| |||||||| |||    
T  6102801 cactttttgccgagcactttggtgtttattatggttggatgttggtaatcaaaaacgctattcaacaggttatttgcaagatagattatttagaag-tct 6102899  T
Q  217 ccatcttcttcaagatccagatc 239  Q
     || ||| ||||| |||||||||    
T  6102900 tcaccttattcaacatccagatc 6102922  T

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